Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Limch1Q3UH68 AC153366.2-201ENSMUST00000219461 1984 ntBASIC14.83□□□□□ -0.04
Limch1Q3UH68 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Limch1Q3UH68 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Limch1Q3UH68 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Limch1Q3UH68 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Limch1Q3UH68 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Limch1Q3UH68 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
Limch1Q3UH68 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC14.82□□□□□ -0.04
Limch1Q3UH68 Gm15808-201ENSMUST00000119046 604 ntBASIC14.82□□□□□ -0.04
Limch1Q3UH68 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Gm7895-201ENSMUST00000187459 1173 ntBASIC14.82□□□□□ -0.04
Limch1Q3UH68 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Gm10608-202ENSMUST00000213924 676 ntBASIC14.82□□□□□ -0.04
Limch1Q3UH68 Gm8227-201ENSMUST00000223306 571 ntBASIC14.82□□□□□ -0.04
Limch1Q3UH68 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC14.82□□□□□ -0.04
Limch1Q3UH68 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Gm37391-201ENSMUST00000194891 2318 ntBASIC14.82□□□□□ -0.04
Limch1Q3UH68 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Gm44292-201ENSMUST00000205194 2364 ntBASIC14.82□□□□□ -0.04
Limch1Q3UH68 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Limch1Q3UH68 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
Limch1Q3UH68 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Limch1Q3UH68 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC14.81□□□□□ -0.04
Limch1Q3UH68 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Limch1Q3UH68 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Gm5637-201ENSMUST00000153890 1119 ntBASIC14.81□□□□□ -0.04
Limch1Q3UH68 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC14.81□□□□□ -0.04
Limch1Q3UH68 Gm37259-201ENSMUST00000193903 849 ntBASIC14.81□□□□□ -0.04
Limch1Q3UH68 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC14.81□□□□□ -0.04
Limch1Q3UH68 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC14.81□□□□□ -0.04
Limch1Q3UH68 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Limch1Q3UH68 AC117194.1-201ENSMUST00000224847 3002 ntBASIC14.81□□□□□ -0.04
Limch1Q3UH68 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC14.81□□□□□ -0.04
Limch1Q3UH68 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Mir877-201ENSMUST00000104738 85 ntBASIC14.8□□□□□ -0.04
Limch1Q3UH68 Gm11591-201ENSMUST00000120063 702 ntBASIC14.8□□□□□ -0.04
Limch1Q3UH68 Gm38158-201ENSMUST00000194617 339 ntBASIC14.8□□□□□ -0.04
Limch1Q3UH68 Gm4768-201ENSMUST00000206199 686 ntBASIC14.8□□□□□ -0.04
Limch1Q3UH68 AC093022.1-201ENSMUST00000226949 1072 ntBASIC14.8□□□□□ -0.04
Limch1Q3UH68 Gm26035-201ENSMUST00000083065 308 ntBASIC14.8□□□□□ -0.04
Limch1Q3UH68 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms