Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Gm13392-201ENSMUST00000117708 150 ntBASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Gm11524-201ENSMUST00000119349 807 ntBASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Gm13813-201ENSMUST00000120998 787 ntBASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Gm15376-201ENSMUST00000122258 783 ntBASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Gm27486-201ENSMUST00000184923 80 ntBASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Gm26035-201ENSMUST00000083065 308 ntBASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Rn7sk-201ENSMUST00000083103 331 ntBASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Gm26315-201ENSMUST00000083890 321 ntBASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 AC122860.2-201ENSMUST00000217967 2671 ntBASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Trav4d-2-201ENSMUST00000120914 335 ntBASIC12.23□□□□□ -0.45
Col28a1Q2UY11 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Gm19078-201ENSMUST00000206311 727 ntBASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Col28a1Q2UY11 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms