Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cd40lgP27548 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Cd40lgP27548 Armc9-201ENSMUST00000027434 5127 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Cd40lgP27548 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC11.66□□□□□ -0.54
Cd40lgP27548 Gm8062-201ENSMUST00000139696 444 ntBASIC11.66□□□□□ -0.54
Cd40lgP27548 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Cd40lgP27548 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cd40lgP27548 Gm16379-201ENSMUST00000161469 348 ntBASIC11.66□□□□□ -0.54
Cd40lgP27548 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC11.66□□□□□ -0.54
Cd40lgP27548 Gm37424-201ENSMUST00000191727 561 ntBASIC11.66□□□□□ -0.54
Cd40lgP27548 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC11.66□□□□□ -0.54
Cd40lgP27548 Gm8762-201ENSMUST00000193486 339 ntBASIC11.66□□□□□ -0.54
Cd40lgP27548 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC11.66□□□□□ -0.54
Cd40lgP27548 Gm9899-201ENSMUST00000065519 555 ntBASIC11.66□□□□□ -0.54
Cd40lgP27548 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cd40lgP27548 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cd40lgP27548 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Cd40lgP27548 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC11.66□□□□□ -0.54
Cd40lgP27548 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Cd40lgP27548 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cd40lgP27548 Pcgf3-201ENSMUST00000046975 7708 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cd40lgP27548 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Cd40lgP27548 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC11.66□□□□□ -0.54
Cd40lgP27548 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cd40lgP27548 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Iqgap3-201ENSMUST00000071812 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC11.65□□□□□ -0.54
Cd40lgP27548 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC11.65□□□□□ -0.54
Cd40lgP27548 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC11.65□□□□□ -0.54
Cd40lgP27548 AC125350.2-201ENSMUST00000224737 727 ntBASIC11.65□□□□□ -0.54
Cd40lgP27548 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Gm10478-201ENSMUST00000084451 396 ntBASIC11.65□□□□□ -0.54
Cd40lgP27548 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Cd40lgP27548 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Gm5466-201ENSMUST00000119395 1890 ntBASIC11.65□□□□□ -0.54
Cd40lgP27548 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Pitpnb-204ENSMUST00000200298 2632 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cd40lgP27548 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
Cd40lgP27548 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
Cd40lgP27548 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Cd40lgP27548 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC11.64□□□□□ -0.55
Cd40lgP27548 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC11.64□□□□□ -0.55
Cd40lgP27548 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Cd40lgP27548 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC11.64□□□□□ -0.55
Cd40lgP27548 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC11.64□□□□□ -0.55
Cd40lgP27548 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Gm11978-201ENSMUST00000122315 466 ntBASIC11.64□□□□□ -0.55
Cd40lgP27548 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Gm27572-201ENSMUST00000183702 255 ntBASIC11.64□□□□□ -0.55
Cd40lgP27548 Gm37008-201ENSMUST00000195712 319 ntBASIC11.64□□□□□ -0.55
Cd40lgP27548 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC11.64□□□□□ -0.55
Cd40lgP27548 Gm43868-201ENSMUST00000205187 2114 ntBASIC11.64□□□□□ -0.55
Cd40lgP27548 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC11.64□□□□□ -0.55
Cd40lgP27548 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Cd40lgP27548 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cd40lgP27548 AC131068.2-201ENSMUST00000226175 1453 ntBASIC11.63□□□□□ -0.55
Cd40lgP27548 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cd40lgP27548 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 61.4 ms