Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Sdc1P18828 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC10.29□□□□□ -0.76
Sdc1P18828 Gm38055-201ENSMUST00000195353 2217 ntBASIC10.29□□□□□ -0.76
Sdc1P18828 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Sdc1P18828 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC10.29□□□□□ -0.76
Sdc1P18828 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Sdc1P18828 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Sdc1P18828 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Sdc1P18828 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
Sdc1P18828 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
Sdc1P18828 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Abcb8-201ENSMUST00000073076 2939 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
Sdc1P18828 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC10.28□□□□□ -0.76
Sdc1P18828 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
Sdc1P18828 Gm15240-201ENSMUST00000118156 720 ntBASIC10.28□□□□□ -0.76
Sdc1P18828 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC10.28□□□□□ -0.76
Sdc1P18828 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC10.28□□□□□ -0.76
Sdc1P18828 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC10.28□□□□□ -0.76
Sdc1P18828 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC10.28□□□□□ -0.76
Sdc1P18828 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC10.28□□□□□ -0.76
Sdc1P18828 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC10.28□□□□□ -0.76
Sdc1P18828 Gm18905-201ENSMUST00000205454 928 ntBASIC10.28□□□□□ -0.76
Sdc1P18828 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC10.28□□□□□ -0.76
Sdc1P18828 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC10.28□□□□□ -0.76
Sdc1P18828 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC10.28□□□□□ -0.76
Sdc1P18828 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC10.28□□□□□ -0.76
Sdc1P18828 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC10.28□□□□□ -0.76
Sdc1P18828 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Hexim1-201ENSMUST00000053063 3495 ntAPPRIS P1 BASIC10.28□□□□□ -0.76
Sdc1P18828 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
Sdc1P18828 Celsr3-207ENSMUST00000213524 9930 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Sdc1P18828 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC10.28□□□□□ -0.76
Sdc1P18828 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC10.27□□□□□ -0.76
Sdc1P18828 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.76
Sdc1P18828 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
Sdc1P18828 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Sdc1P18828 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.76
Sdc1P18828 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
Sdc1P18828 Rin2-201ENSMUST00000094480 4657 ntAPPRIS P2 TSL 5 BASIC10.27□□□□□ -0.76
Sdc1P18828 Iqsec1-201ENSMUST00000101151 6490 ntTSL 5 BASIC10.27□□□□□ -0.76
Sdc1P18828 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.76
Sdc1P18828 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.76
Sdc1P18828 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC10.27□□□□□ -0.77
Sdc1P18828 Timm22-201ENSMUST00000021203 2817 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Sdc1P18828 Dsc2-201ENSMUST00000039247 4630 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
Sdc1P18828 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Sdc1P18828 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC10.27□□□□□ -0.77
Sdc1P18828 Gm12350-201ENSMUST00000121208 462 ntBASIC10.27□□□□□ -0.77
Sdc1P18828 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC10.27□□□□□ -0.77
Sdc1P18828 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Sdc1P18828 Gm10576-201ENSMUST00000191927 825 ntBASIC10.27□□□□□ -0.77
Sdc1P18828 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Sdc1P18828 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Sdc1P18828 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC10.27□□□□□ -0.77
Sdc1P18828 Gm9229-201ENSMUST00000222777 126 ntBASIC10.27□□□□□ -0.77
Sdc1P18828 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC10.27□□□□□ -0.77
Sdc1P18828 Gm24447-201ENSMUST00000083977 338 ntBASIC10.27□□□□□ -0.77
Sdc1P18828 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Sdc1P18828 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
Sdc1P18828 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC10.27□□□□□ -0.77
Sdc1P18828 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC10.27□□□□□ -0.77
Sdc1P18828 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Sdc1P18828 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC10.27□□□□□ -0.77
Sdc1P18828 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Sdc1P18828 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Sdc1P18828 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Sdc1P18828 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Sdc1P18828 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Sdc1P18828 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Sdc1P18828 Zfp654-202ENSMUST00000207826 6261 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.77
Sdc1P18828 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Sdc1P18828 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Sdc1P18828 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC10.26□□□□□ -0.77
Sdc1P18828 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Sdc1P18828 Nynrin-201ENSMUST00000100529 6990 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Sdc1P18828 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
Sdc1P18828 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Sdc1P18828 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Sdc1P18828 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 62.6 ms