Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc9Q8VC31 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Ccdc9Q8VC31 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC15.16■□□□□ 0.02
Ccdc9Q8VC31 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc9Q8VC31 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc9Q8VC31 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc9Q8VC31 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC15.16■□□□□ 0.02
Ccdc9Q8VC31 Armcx2-202ENSMUST00000113193 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Zfand2a-201ENSMUST00000079996 3169 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Gm42913-201ENSMUST00000197936 1853 ntBASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Usp2-203ENSMUST00000114830 2122 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Gm5867-201ENSMUST00000063197 592 ntBASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc9Q8VC31 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Gm13332-201ENSMUST00000120451 1398 ntBASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Olfr1495-203ENSMUST00000216980 2063 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Gm25287-201ENSMUST00000103846 110 ntBASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Gm22918-201ENSMUST00000103855 110 ntBASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Gm18889-201ENSMUST00000174284 929 ntBASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 AC131710.1-201ENSMUST00000228336 990 ntBASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Plekhb1-205ENSMUST00000107046 2793 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 AC124751.1-201ENSMUST00000222716 1408 ntBASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 AC129336.2-201ENSMUST00000218053 3086 ntBASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Nhlh2-201ENSMUST00000066187 3761 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Tbc1d17-201ENSMUST00000047085 8750 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ccdc9Q8VC31 Vezt-202ENSMUST00000118077 2223 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 Myo15b-201ENSMUST00000040703 2825 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 Gm9025-201ENSMUST00000122415 1575 ntBASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 AC113060.1-201ENSMUST00000225689 1573 ntBASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 P2ry1-201ENSMUST00000029331 3886 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ccdc9Q8VC31 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms