Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Gm15711-201ENSMUST00000118889 535 ntBASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Gm12266-201ENSMUST00000120311 962 ntBASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Gm27627-201ENSMUST00000183644 150 ntBASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Gm37986-201ENSMUST00000193285 383 ntBASIC17.22■□□□□ 0.35
Usp40Q8BWR4 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
Usp40Q8BWR4 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Gm11989-201ENSMUST00000117240 672 ntBASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Gm11362-201ENSMUST00000118838 850 ntBASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Gm22902-201ENSMUST00000158488 302 ntBASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Gm20426-201ENSMUST00000173657 440 ntBASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Gm44136-201ENSMUST00000203819 1106 ntBASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Usp40Q8BWR4 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Usp40Q8BWR4 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Usp40Q8BWR4 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Usp40Q8BWR4 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Gm26035-201ENSMUST00000083065 308 ntBASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Usp40Q8BWR4 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms