Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC14.86□□□□□ -0.03
Trim56Q80VI1 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 AC126262.1-201ENSMUST00000221802 1904 ntBASIC14.86□□□□□ -0.03
Trim56Q80VI1 Gm2420-201ENSMUST00000119864 2149 ntBASIC14.86□□□□□ -0.03
Trim56Q80VI1 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Gm18227-201ENSMUST00000211082 1468 ntBASIC14.85□□□□□ -0.03
Trim56Q80VI1 Gm5884-201ENSMUST00000036712 1479 ntBASIC14.85□□□□□ -0.03
Trim56Q80VI1 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Gm14726-201ENSMUST00000120623 896 ntBASIC14.85□□□□□ -0.03
Trim56Q80VI1 Gm14832-201ENSMUST00000121289 322 ntBASIC14.85□□□□□ -0.03
Trim56Q80VI1 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Gm37444-201ENSMUST00000193605 439 ntBASIC14.85□□□□□ -0.03
Trim56Q80VI1 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Gm8712-201ENSMUST00000221090 701 ntBASIC14.85□□□□□ -0.03
Trim56Q80VI1 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim56Q80VI1 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim56Q80VI1 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
Trim56Q80VI1 AC121805.2-201ENSMUST00000218808 2538 ntBASIC14.84□□□□□ -0.03
Trim56Q80VI1 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC14.84□□□□□ -0.03
Trim56Q80VI1 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Ighv1-62-201ENSMUST00000193406 350 ntBASIC14.84□□□□□ -0.03
Trim56Q80VI1 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Gm8862-201ENSMUST00000198379 1346 ntBASIC14.84□□□□□ -0.03
Trim56Q80VI1 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim56Q80VI1 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Trim56Q80VI1 Gm27196-201ENSMUST00000184787 2582 ntBASIC14.83□□□□□ -0.03
Trim56Q80VI1 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Trim56Q80VI1 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Trim56Q80VI1 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Trim56Q80VI1 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Trim56Q80VI1 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC14.83□□□□□ -0.03
Trim56Q80VI1 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC14.83□□□□□ -0.03
Trim56Q80VI1 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Trim56Q80VI1 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Trim56Q80VI1 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Trim56Q80VI1 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim56Q80VI1 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Gm23119-201ENSMUST00000158610 140 ntBASIC14.83□□□□□ -0.04
Trim56Q80VI1 Gm17376-201ENSMUST00000166016 84 ntBASIC14.83□□□□□ -0.04
Trim56Q80VI1 Gm27023-201ENSMUST00000182372 285 ntBASIC14.83□□□□□ -0.04
Trim56Q80VI1 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC14.83□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 75.3 ms