Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Scaf4Q6PFF0 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Scaf4Q6PFF0 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Scaf4Q6PFF0 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC12.42□□□□□ -0.42
Scaf4Q6PFF0 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Scaf4Q6PFF0 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Scaf4Q6PFF0 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Scaf4Q6PFF0 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Scaf4Q6PFF0 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Scaf4Q6PFF0 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Scaf4Q6PFF0 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Scaf4Q6PFF0 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Scaf4Q6PFF0 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Scaf4Q6PFF0 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Scaf4Q6PFF0 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
Scaf4Q6PFF0 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Scaf4Q6PFF0 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Gm42943-201ENSMUST00000199676 3242 ntBASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Gm3365-201ENSMUST00000216296 1480 ntBASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Gm15703-201ENSMUST00000120250 880 ntBASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Scaf4Q6PFF0 Gm18983-201ENSMUST00000222884 2729 ntBASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Gm23363-201ENSMUST00000175024 79 ntBASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Gm28631-201ENSMUST00000190740 334 ntBASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Gm44260-201ENSMUST00000204946 2094 ntBASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Scaf4Q6PFF0 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Scaf4Q6PFF0 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Scaf4Q6PFF0 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Scaf4Q6PFF0 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms