Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Itm2b-204ENSMUST00000228637 783 ntBASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Gm5940-201ENSMUST00000117582 1068 ntBASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Gm12203-201ENSMUST00000118235 598 ntBASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Gm12209-201ENSMUST00000120089 596 ntBASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Gm7399-201ENSMUST00000032395 858 ntBASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Gm7224-201ENSMUST00000121359 2066 ntBASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Gm12846-201ENSMUST00000120431 1373 ntBASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sh3rf1Q69ZI1 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Gm43721-201ENSMUST00000199677 2313 ntBASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Gm37105-201ENSMUST00000192251 2085 ntBASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Gm43365-201ENSMUST00000196522 2106 ntBASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Gm27514-201ENSMUST00000183692 110 ntBASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 61.8 ms