Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC11.48□□□□□ -0.57
Usf1Q61069 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Usf1Q61069 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Usf1Q61069 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Usf1Q61069 Gm9025-201ENSMUST00000122415 1575 ntBASIC11.48□□□□□ -0.57
Usf1Q61069 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Usf1Q61069 AC113060.1-201ENSMUST00000225689 1573 ntBASIC11.48□□□□□ -0.57
Usf1Q61069 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Usf1Q61069 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usf1Q61069 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC11.48□□□□□ -0.57
Usf1Q61069 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usf1Q61069 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Usf1Q61069 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usf1Q61069 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC11.48□□□□□ -0.57
Usf1Q61069 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usf1Q61069 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usf1Q61069 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usf1Q61069 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usf1Q61069 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Usf1Q61069 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usf1Q61069 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Usf1Q61069 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Usf1Q61069 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
Usf1Q61069 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Gm6580-201ENSMUST00000117504 1357 ntBASIC11.47□□□□□ -0.57
Usf1Q61069 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Mir680-2-201ENSMUST00000102163 110 ntBASIC11.47□□□□□ -0.57
Usf1Q61069 Gm23251-201ENSMUST00000103773 110 ntBASIC11.47□□□□□ -0.57
Usf1Q61069 Gm11941-201ENSMUST00000119904 610 ntBASIC11.47□□□□□ -0.57
Usf1Q61069 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Gm18038-201ENSMUST00000197900 485 ntBASIC11.47□□□□□ -0.57
Usf1Q61069 AC166992.1-201ENSMUST00000216356 565 ntBASIC11.47□□□□□ -0.57
Usf1Q61069 AC163667.3-201ENSMUST00000225774 222 ntBASIC11.47□□□□□ -0.57
Usf1Q61069 Gm1821-202ENSMUST00000227415 750 ntBASIC11.47□□□□□ -0.57
Usf1Q61069 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Gm21811-201ENSMUST00000096485 930 ntBASIC11.47□□□□□ -0.57
Usf1Q61069 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Usf1Q61069 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC11.47□□□□□ -0.57
Usf1Q61069 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usf1Q61069 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC11.46□□□□□ -0.57
Usf1Q61069 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Usf1Q61069 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Usf1Q61069 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 Gm18626-201ENSMUST00000221512 1409 ntBASIC11.46□□□□□ -0.57
Usf1Q61069 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
Usf1Q61069 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 Gm12501-201ENSMUST00000119163 529 ntBASIC11.46□□□□□ -0.57
Usf1Q61069 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC11.46□□□□□ -0.57
Usf1Q61069 Gm17391-201ENSMUST00000171036 126 ntBASIC11.46□□□□□ -0.57
Usf1Q61069 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC11.46□□□□□ -0.57
Usf1Q61069 Gm43916-201ENSMUST00000205062 967 ntBASIC11.46□□□□□ -0.57
Usf1Q61069 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC11.46□□□□□ -0.57
Usf1Q61069 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Usf1Q61069 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Usf1Q61069 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Usf1Q61069 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
Usf1Q61069 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Usf1Q61069 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Usf1Q61069 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Usf1Q61069 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.58
Usf1Q61069 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 56.9 ms