Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Gm8598-201ENSMUST00000221184 836 ntBASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Olfr582-201ENSMUST00000098212 960 ntBASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Gm6091-201ENSMUST00000098307 165 ntBASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Gm42748-201ENSMUST00000199354 2341 ntBASIC12.23□□□□□ -0.45
Usp39Q3TIX9 CT009757.3-201ENSMUST00000223367 2320 ntBASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 CT009713.10-201ENSMUST00000225013 1986 ntBASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp39Q3TIX9 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Gm13123-201ENSMUST00000122173 492 ntBASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Proscos-202ENSMUST00000178990 666 ntBASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC12.22□□□□□ -0.45
Usp39Q3TIX9 AC169036.1-201ENSMUST00000227994 296 ntBASIC12.22□□□□□ -0.45
Usp39Q3TIX9 AC140451.2-201ENSMUST00000228030 664 ntBASIC12.22□□□□□ -0.45
Usp39Q3TIX9 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Mir339-201ENSMUST00000083659 96 ntBASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
Usp39Q3TIX9 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usp39Q3TIX9 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Usp39Q3TIX9 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Usp39Q3TIX9 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Usp39Q3TIX9 Gm42853-201ENSMUST00000201273 1387 ntBASIC12.21□□□□□ -0.45
Usp39Q3TIX9 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usp39Q3TIX9 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC12.21□□□□□ -0.45
Usp39Q3TIX9 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms