Protein–RNA interactions for Protein: Q03358

Msx2, Homeobox protein MSX-2, mousemouse

Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx2Q03358 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC12.23□□□□□ -0.45
Msx2Q03358 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC12.23□□□□□ -0.45
Msx2Q03358 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Rbm6-201ENSMUST00000035201 3999 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC12.23□□□□□ -0.45
Msx2Q03358 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Msx2Q03358 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC12.22□□□□□ -0.45
Msx2Q03358 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Msx2Q03358 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC12.22□□□□□ -0.45
Msx2Q03358 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
Msx2Q03358 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Gm6211-201ENSMUST00000147973 4275 ntBASIC12.22□□□□□ -0.45
Msx2Q03358 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC12.22□□□□□ -0.45
Msx2Q03358 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Msx2Q03358 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC12.22□□□□□ -0.45
Msx2Q03358 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC12.22□□□□□ -0.45
Msx2Q03358 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Msx2Q03358 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC12.22□□□□□ -0.45
Msx2Q03358 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC12.22□□□□□ -0.45
Msx2Q03358 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC12.22□□□□□ -0.45
Msx2Q03358 Gm9061-201ENSMUST00000182707 1006 ntBASIC12.22□□□□□ -0.45
Msx2Q03358 AC122305.4-201ENSMUST00000216159 1206 ntBASIC12.22□□□□□ -0.45
Msx2Q03358 AC155258.1-201ENSMUST00000219303 253 ntBASIC12.22□□□□□ -0.45
Msx2Q03358 AC126408.1-201ENSMUST00000225184 523 ntBASIC12.22□□□□□ -0.45
Msx2Q03358 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Gm26035-201ENSMUST00000083065 308 ntBASIC12.22□□□□□ -0.45
Msx2Q03358 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC12.22□□□□□ -0.45
Msx2Q03358 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC12.22□□□□□ -0.45
Msx2Q03358 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Msx2Q03358 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Msx2Q03358 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Msx2Q03358 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.45
Msx2Q03358 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Msx2Q03358 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Msx2Q03358 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Bhlha15-201ENSMUST00000060747 3494 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Msx2Q03358 Gm16342-201ENSMUST00000124025 1025 ntBASIC12.21□□□□□ -0.45
Msx2Q03358 Crls1-204ENSMUST00000124836 1267 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Msx2Q03358 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC12.21□□□□□ -0.45
Msx2Q03358 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Msx2Q03358 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC12.21□□□□□ -0.45
Msx2Q03358 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC12.21□□□□□ -0.45
Msx2Q03358 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Msx2Q03358 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
Msx2Q03358 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
Msx2Q03358 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Msx2Q03358 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.46
Msx2Q03358 AC154639.1-201ENSMUST00000224393 2849 ntBASIC12.21□□□□□ -0.46
Msx2Q03358 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Msx2Q03358 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Msx2Q03358 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms