Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC10.77□□□□□ -0.68
Col8a1Q00780 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC10.77□□□□□ -0.68
Col8a1Q00780 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC10.77□□□□□ -0.68
Col8a1Q00780 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.68
Col8a1Q00780 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Col8a1Q00780 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Col8a1Q00780 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Col8a1Q00780 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Col8a1Q00780 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Col8a1Q00780 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Col8a1Q00780 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Col8a1Q00780 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Col8a1Q00780 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Col8a1Q00780 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.68
Col8a1Q00780 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
Col8a1Q00780 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Gm44065-201ENSMUST00000203184 3527 ntBASIC10.77□□□□□ -0.69
Col8a1Q00780 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC10.77□□□□□ -0.69
Col8a1Q00780 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC10.77□□□□□ -0.69
Col8a1Q00780 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC10.77□□□□□ -0.69
Col8a1Q00780 Gm12165-201ENSMUST00000117047 342 ntBASIC10.77□□□□□ -0.69
Col8a1Q00780 Gm11340-201ENSMUST00000119226 412 ntBASIC10.77□□□□□ -0.69
Col8a1Q00780 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC10.77□□□□□ -0.69
Col8a1Q00780 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC10.77□□□□□ -0.69
Col8a1Q00780 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC10.77□□□□□ -0.69
Col8a1Q00780 Gm37201-201ENSMUST00000191845 523 ntBASIC10.77□□□□□ -0.69
Col8a1Q00780 Gm7207-201ENSMUST00000211575 1067 ntBASIC10.77□□□□□ -0.69
Col8a1Q00780 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC10.77□□□□□ -0.69
Col8a1Q00780 AC132901.1-201ENSMUST00000224345 508 ntBASIC10.77□□□□□ -0.69
Col8a1Q00780 AC174797.2-202ENSMUST00000225729 568 ntBASIC10.77□□□□□ -0.69
Col8a1Q00780 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC10.77□□□□□ -0.69
Col8a1Q00780 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Col8a1Q00780 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
Col8a1Q00780 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
Col8a1Q00780 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Col8a1Q00780 Mbnl2-204ENSMUST00000227012 2390 ntBASIC10.76□□□□□ -0.69
Col8a1Q00780 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
Col8a1Q00780 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC10.76□□□□□ -0.69
Col8a1Q00780 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC10.76□□□□□ -0.69
Col8a1Q00780 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
Col8a1Q00780 Gm13045-201ENSMUST00000119019 712 ntBASIC10.76□□□□□ -0.69
Col8a1Q00780 Gm6039-201ENSMUST00000121667 1250 ntBASIC10.76□□□□□ -0.69
Col8a1Q00780 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC10.76□□□□□ -0.69
Col8a1Q00780 Gm12798-201ENSMUST00000124786 666 ntTSL 5 BASIC10.76□□□□□ -0.69
Col8a1Q00780 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
Col8a1Q00780 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC10.76□□□□□ -0.69
Col8a1Q00780 Rn7s6-201ENSMUST00000175005 291 ntBASIC10.76□□□□□ -0.69
Col8a1Q00780 Gm29155-201ENSMUST00000185910 269 ntBASIC10.76□□□□□ -0.69
Col8a1Q00780 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC10.76□□□□□ -0.69
Col8a1Q00780 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 AC154532.1-201ENSMUST00000227860 965 ntBASIC10.76□□□□□ -0.69
Col8a1Q00780 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
Col8a1Q00780 Srp19-201ENSMUST00000072576 876 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Gm4950-201ENSMUST00000091905 618 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
Col8a1Q00780 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Col8a1Q00780 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Col8a1Q00780 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
Col8a1Q00780 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
Col8a1Q00780 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Col8a1Q00780 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Col8a1Q00780 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 88.6 ms