Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
Shmt1P50431 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Shmt1P50431 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Gm23270-201ENSMUST00000104055 131 ntBASIC13.32□□□□□ -0.28
Shmt1P50431 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC13.32□□□□□ -0.28
Shmt1P50431 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC13.32□□□□□ -0.28
Shmt1P50431 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
Shmt1P50431 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Shmt1P50431 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC13.32□□□□□ -0.28
Shmt1P50431 Gm37201-201ENSMUST00000191845 523 ntBASIC13.32□□□□□ -0.28
Shmt1P50431 Gm38000-201ENSMUST00000192390 1215 ntBASIC13.32□□□□□ -0.28
Shmt1P50431 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC13.32□□□□□ -0.28
Shmt1P50431 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC13.32□□□□□ -0.28
Shmt1P50431 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Gm44942-201ENSMUST00000096093 2072 ntBASIC13.32□□□□□ -0.28
Shmt1P50431 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Shmt1P50431 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 Retreg1-206ENSMUST00000228306 1430 ntBASIC13.31□□□□□ -0.28
Shmt1P50431 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Shmt1P50431 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Shmt1P50431 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Shmt1P50431 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 Gm24231-201ENSMUST00000104315 133 ntBASIC13.31□□□□□ -0.28
Shmt1P50431 Gm14999-201ENSMUST00000121039 624 ntBASIC13.31□□□□□ -0.28
Shmt1P50431 Gm14760-201ENSMUST00000121831 999 ntBASIC13.31□□□□□ -0.28
Shmt1P50431 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC13.31□□□□□ -0.28
Shmt1P50431 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 Rmrp-201ENSMUST00000157463 271 ntBASIC13.31□□□□□ -0.28
Shmt1P50431 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 Gm26956-201ENSMUST00000182176 986 ntBASIC13.31□□□□□ -0.28
Shmt1P50431 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC13.31□□□□□ -0.28
Shmt1P50431 AL732506.1-201ENSMUST00000226420 281 ntBASIC13.31□□□□□ -0.28
Shmt1P50431 Gm20633-201ENSMUST00000176742 2831 ntBASIC13.31□□□□□ -0.28
Shmt1P50431 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Shmt1P50431 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
Shmt1P50431 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Shmt1P50431 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Shmt1P50431 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 Gm2673-201ENSMUST00000120958 1608 ntBASIC13.31□□□□□ -0.28
Shmt1P50431 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Shmt1P50431 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Shmt1P50431 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Shmt1P50431 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Shmt1P50431 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Shmt1P50431 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Shmt1P50431 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC13.3□□□□□ -0.28
Shmt1P50431 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Shmt1P50431 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
Shmt1P50431 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC13.3□□□□□ -0.28
Shmt1P50431 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Shmt1P50431 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Shmt1P50431 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Shmt1P50431 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Shmt1P50431 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Shmt1P50431 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Shmt1P50431 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Shmt1P50431 Gm14726-201ENSMUST00000120623 896 ntBASIC13.3□□□□□ -0.28
Shmt1P50431 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC13.3□□□□□ -0.28
Shmt1P50431 Gm12749-201ENSMUST00000122138 1159 ntBASIC13.3□□□□□ -0.28
Shmt1P50431 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC13.3□□□□□ -0.28
Shmt1P50431 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC13.3□□□□□ -0.28
Shmt1P50431 Gm9022-201ENSMUST00000182482 992 ntBASIC13.3□□□□□ -0.28
Shmt1P50431 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC13.3□□□□□ -0.28
Shmt1P50431 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC13.3□□□□□ -0.28
Shmt1P50431 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC13.3□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms