Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm24830-201ENSMUST00000102024 166 ntBASIC14.61□□□□□ -0.07
Traf1P39428 Gm13736-201ENSMUST00000119272 253 ntBASIC14.61□□□□□ -0.07
Traf1P39428 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC14.61□□□□□ -0.07
Traf1P39428 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC14.61□□□□□ -0.07
Traf1P39428 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC14.61□□□□□ -0.07
Traf1P39428 Gm25890-201ENSMUST00000177643 165 ntBASIC14.61□□□□□ -0.07
Traf1P39428 Rnu1b2-201ENSMUST00000178073 165 ntBASIC14.61□□□□□ -0.07
Traf1P39428 Rnu1b1-201ENSMUST00000178250 165 ntBASIC14.61□□□□□ -0.07
Traf1P39428 Gm22614-201ENSMUST00000178300 165 ntBASIC14.61□□□□□ -0.07
Traf1P39428 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC14.61□□□□□ -0.07
Traf1P39428 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC14.61□□□□□ -0.07
Traf1P39428 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
Traf1P39428 AC166095.1-201ENSMUST00000223731 1241 ntBASIC14.61□□□□□ -0.07
Traf1P39428 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 Gm22042-201ENSMUST00000082989 165 ntBASIC14.61□□□□□ -0.07
Traf1P39428 Gm26232-201ENSMUST00000083360 166 ntBASIC14.61□□□□□ -0.07
Traf1P39428 Gm24136-201ENSMUST00000083374 165 ntBASIC14.61□□□□□ -0.07
Traf1P39428 Rnu1b6-201ENSMUST00000083839 166 ntBASIC14.61□□□□□ -0.07
Traf1P39428 Gm26110-201ENSMUST00000083971 165 ntBASIC14.61□□□□□ -0.07
Traf1P39428 Mir433-201ENSMUST00000093564 124 ntBASIC14.61□□□□□ -0.07
Traf1P39428 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
Traf1P39428 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC14.61□□□□□ -0.07
Traf1P39428 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC14.61□□□□□ -0.07
Traf1P39428 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Traf1P39428 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Traf1P39428 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC14.61□□□□□ -0.07
Traf1P39428 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Traf1P39428 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Traf1P39428 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Traf1P39428 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC14.6□□□□□ -0.07
Traf1P39428 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC14.6□□□□□ -0.07
Traf1P39428 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC14.6□□□□□ -0.07
Traf1P39428 Gm15276-201ENSMUST00000145953 498 ntBASIC14.6□□□□□ -0.07
Traf1P39428 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC14.6□□□□□ -0.07
Traf1P39428 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
Traf1P39428 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC14.6□□□□□ -0.07
Traf1P39428 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC14.6□□□□□ -0.07
Traf1P39428 Gm18615-201ENSMUST00000222919 1031 ntBASIC14.6□□□□□ -0.07
Traf1P39428 CT485787.1-201ENSMUST00000225617 968 ntBASIC14.6□□□□□ -0.07
Traf1P39428 AC126253.1-202ENSMUST00000226732 835 ntBASIC14.6□□□□□ -0.07
Traf1P39428 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC14.6□□□□□ -0.07
Traf1P39428 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
Traf1P39428 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC14.6□□□□□ -0.07
Traf1P39428 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Traf1P39428 Gm20633-201ENSMUST00000176742 2831 ntBASIC14.6□□□□□ -0.07
Traf1P39428 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Traf1P39428 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC14.59□□□□□ -0.07
Traf1P39428 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Traf1P39428 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Gm23270-201ENSMUST00000104055 131 ntBASIC14.59□□□□□ -0.07
Traf1P39428 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC14.59□□□□□ -0.07
Traf1P39428 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC14.59□□□□□ -0.07
Traf1P39428 Gm3096-201ENSMUST00000185770 364 ntBASIC14.59□□□□□ -0.07
Traf1P39428 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 AC165260.3-202ENSMUST00000224550 1031 ntBASIC14.59□□□□□ -0.07
Traf1P39428 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC14.59□□□□□ -0.07
Traf1P39428 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 63.2 ms