Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Gm44364-201ENSMUST00000198368 141 ntBASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cpsf3Q9QXK7 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Retreg1-206ENSMUST00000228306 1430 ntBASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Rmrp-201ENSMUST00000157463 271 ntBASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Gm30285-201ENSMUST00000214614 422 ntBASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 AL732506.1-201ENSMUST00000226420 281 ntBASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Gm43364-201ENSMUST00000196046 3274 ntBASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cpsf3Q9QXK7 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Gm22323-201ENSMUST00000103832 109 ntBASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Gm24255-201ENSMUST00000104481 128 ntBASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Gm25043-201ENSMUST00000158604 212 ntBASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Gm7584-201ENSMUST00000175829 940 ntBASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Gm37201-201ENSMUST00000191845 523 ntBASIC13.55□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 66.7 ms