Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 B2m-201ENSMUST00000102476 860 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Scn4aQ9ER60 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Gm15815-201ENSMUST00000120569 255 ntBASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Oprm1-222ENSMUST00000135502 1363 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Gm14798-201ENSMUST00000139695 1189 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Adora3-202ENSMUST00000164730 1219 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Gm43506-201ENSMUST00000200675 753 ntBASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Gm18010-201ENSMUST00000203553 202 ntBASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Gm44711-201ENSMUST00000205414 1264 ntBASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Gm26670-202ENSMUST00000226862 340 ntBASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Stk31-201ENSMUST00000024171 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Izumo1r-202ENSMUST00000069408 1172 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Zfp125-201ENSMUST00000079237 2488 ntBASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Gm5449-201ENSMUST00000081132 357 ntBASIC16.75■□□□□ 0.27
Scn4aQ9ER60 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Gm23604-201ENSMUST00000104311 132 ntBASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Hist1h2bk-201ENSMUST00000110455 476 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Mir1905-201ENSMUST00000122779 82 ntBASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Cdhr4-208ENSMUST00000176373 492 ntTSL 5 BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Gm17597-201ENSMUST00000181220 1115 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Gm8197-202ENSMUST00000193422 934 ntBASIC16.74■□□□□ 0.27
Scn4aQ9ER60 AC162938.2-202ENSMUST00000215497 722 ntTSL 5 BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Zc3hc1-202ENSMUST00000102992 1865 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Scn4aQ9ER60 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Ppp1r32-201ENSMUST00000038842 1458 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Airn-205ENSMUST00000161890 1375 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Mir874-201ENSMUST00000104769 76 ntBASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Nr5a1os-201ENSMUST00000146954 926 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 9130204K15Rik-202ENSMUST00000150312 696 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Gm25830-201ENSMUST00000158923 132 ntBASIC16.73■□□□□ 0.27
Scn4aQ9ER60 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Tnnt1-206ENSMUST00000163710 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Cd79b-202ENSMUST00000167143 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Rhox12-203ENSMUST00000183737 761 ntTSL 3 BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Gm6108-201ENSMUST00000208365 367 ntBASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Gm18035-201ENSMUST00000211962 589 ntBASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Gm9487-201ENSMUST00000216600 472 ntBASIC16.73■□□□□ 0.27
Scn4aQ9ER60 AC113082.1-201ENSMUST00000217324 327 ntBASIC16.73■□□□□ 0.27
Scn4aQ9ER60 AC159282.1-204ENSMUST00000219472 780 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 CT010506.1-201ENSMUST00000223673 349 ntBASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Gm8181-201ENSMUST00000062242 669 ntBASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Gabarapl2-201ENSMUST00000034428 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Platr19-201ENSMUST00000171380 1466 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Gm23769-201ENSMUST00000104441 121 ntBASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Gm25569-201ENSMUST00000157175 131 ntBASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Kcne3-206ENSMUST00000207995 439 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 AC154305.2-201ENSMUST00000225813 901 ntBASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Crygb-201ENSMUST00000027090 634 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Scn4aQ9ER60 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Gm26818-201ENSMUST00000181367 1360 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Ifitm1-202ENSMUST00000106040 560 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Ifitm1-203ENSMUST00000106042 882 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Nup188-202ENSMUST00000113634 534 ntTSL 2 BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Gm13267-202ENSMUST00000150099 281 ntTSL 2 BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Gm16030-201ENSMUST00000159098 603 ntBASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Gm8459-201ENSMUST00000162504 760 ntBASIC16.72■□□□□ 0.27
Scn4aQ9ER60 1700085C21Rik-201ENSMUST00000187123 1082 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 CT009546.1-201ENSMUST00000222573 1120 ntBASIC16.72■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 74.8 ms