Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Gm12241-201ENSMUST00000118330 726 ntBASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Gm7584-201ENSMUST00000175829 940 ntBASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Gm6222-202ENSMUST00000182143 629 ntBASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Gm29396-201ENSMUST00000185659 716 ntBASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Gm5850-201ENSMUST00000192923 1206 ntBASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Olfr284-202ENSMUST00000206647 966 ntBASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Gm19163-201ENSMUST00000223313 780 ntBASIC11.76□□□□□ -0.53
Cdc40Q9DC48 AC154462.2-201ENSMUST00000227519 370 ntBASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Gm43579-201ENSMUST00000202387 1307 ntBASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Gm25261-201ENSMUST00000157416 134 ntBASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Gm9061-201ENSMUST00000182707 1006 ntBASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Gm6203-201ENSMUST00000209575 1342 ntBASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Gm44094-201ENSMUST00000204703 2030 ntBASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdc40Q9DC48 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdc40Q9DC48 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdc40Q9DC48 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdc40Q9DC48 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Cdc40Q9DC48 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdc40Q9DC48 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Cdc40Q9DC48 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
Cdc40Q9DC48 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Cdc40Q9DC48 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdc40Q9DC48 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdc40Q9DC48 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Cdc40Q9DC48 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdc40Q9DC48 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdc40Q9DC48 Gm11658-201ENSMUST00000120913 1008 ntBASIC11.74□□□□□ -0.53
Cdc40Q9DC48 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC11.74□□□□□ -0.53
Cdc40Q9DC48 Gm5637-201ENSMUST00000153890 1119 ntBASIC11.74□□□□□ -0.53
Cdc40Q9DC48 Gm2467-201ENSMUST00000182266 1010 ntBASIC11.74□□□□□ -0.53
Cdc40Q9DC48 Gm6981-201ENSMUST00000182467 1008 ntBASIC11.74□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms