Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Vps28Q9D1C8 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps28Q9D1C8 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps28Q9D1C8 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps28Q9D1C8 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps28Q9D1C8 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps28Q9D1C8 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC12.97□□□□□ -0.33
Vps28Q9D1C8 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps28Q9D1C8 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps28Q9D1C8 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC12.97□□□□□ -0.33
Vps28Q9D1C8 AC164702.1-201ENSMUST00000220135 2212 ntBASIC12.97□□□□□ -0.33
Vps28Q9D1C8 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps28Q9D1C8 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps28Q9D1C8 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps28Q9D1C8 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Vps28Q9D1C8 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Gm3756-201ENSMUST00000169182 1355 ntBASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Gm15370-201ENSMUST00000117158 253 ntBASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Mir6420-201ENSMUST00000185032 102 ntBASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps28Q9D1C8 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC12.96□□□□□ -0.34
Vps28Q9D1C8 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.34
Vps28Q9D1C8 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Vps28Q9D1C8 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Vps28Q9D1C8 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Vps28Q9D1C8 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
Vps28Q9D1C8 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Vps28Q9D1C8 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Vps28Q9D1C8 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Vps28Q9D1C8 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Vps28Q9D1C8 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Vps28Q9D1C8 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Gm10434-201ENSMUST00000101158 471 ntBASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Gm4986-201ENSMUST00000119731 549 ntBASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Mir8109-201ENSMUST00000184375 117 ntBASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Gm38092-201ENSMUST00000195600 653 ntBASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 AC132384.14-201ENSMUST00000219346 1147 ntBASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Gm7046-201ENSMUST00000221351 977 ntBASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps28Q9D1C8 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 AC154747.3-201ENSMUST00000224471 3470 ntBASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 91.2 ms