Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC17.74■□□□□ 0.43
Usp47Q8BY87 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Gm9678-201ENSMUST00000198979 1149 ntBASIC17.74■□□□□ 0.43
Usp47Q8BY87 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Usp47Q8BY87 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp47Q8BY87 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Usp47Q8BY87 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp47Q8BY87 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Gm7993-201ENSMUST00000200970 1384 ntBASIC17.73■□□□□ 0.43
Usp47Q8BY87 Gm14130-201ENSMUST00000118417 987 ntBASIC17.73■□□□□ 0.43
Usp47Q8BY87 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Usp47Q8BY87 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Gm5070-201ENSMUST00000177599 862 ntBASIC17.73■□□□□ 0.43
Usp47Q8BY87 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Gm44262-201ENSMUST00000204969 372 ntBASIC17.73■□□□□ 0.43
Usp47Q8BY87 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC17.73■□□□□ 0.43
Usp47Q8BY87 AC159747.1-201ENSMUST00000219903 265 ntBASIC17.73■□□□□ 0.43
Usp47Q8BY87 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Gm26616-202ENSMUST00000195676 3107 ntBASIC17.73■□□□□ 0.43
Usp47Q8BY87 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp47Q8BY87 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp47Q8BY87 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Gm7619-201ENSMUST00000210649 1282 ntBASIC17.72■□□□□ 0.43
Usp47Q8BY87 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Usp47Q8BY87 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms