Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm43045-201ENSMUST00000198725 2095 ntBASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC17.25■□□□□ 0.35
Usp40Q8BWR4 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm5616-201ENSMUST00000165252 384 ntBASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm8741-201ENSMUST00000174736 384 ntBASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm29615-201ENSMUST00000185371 697 ntBASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm28224-201ENSMUST00000186078 697 ntBASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm29001-201ENSMUST00000186177 697 ntBASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm28292-201ENSMUST00000186593 697 ntBASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm28101-201ENSMUST00000187608 697 ntBASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm29076-201ENSMUST00000187689 697 ntBASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm28302-201ENSMUST00000187931 697 ntBASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm28646-201ENSMUST00000188220 697 ntBASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm28205-201ENSMUST00000189177 697 ntBASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm29032-201ENSMUST00000189797 697 ntBASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm28695-201ENSMUST00000190300 697 ntBASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm37448-201ENSMUST00000192795 697 ntBASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm45706-201ENSMUST00000213063 2136 ntBASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usp40Q8BWR4 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Gm24934-201ENSMUST00000103764 111 ntBASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC17.24■□□□□ 0.35
Usp40Q8BWR4 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 AC154252.2-201ENSMUST00000223593 767 ntBASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Usp40Q8BWR4 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Gm23949-201ENSMUST00000104027 127 ntBASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Mir3547-201ENSMUST00000175461 88 ntBASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Gm34767-201ENSMUST00000191813 1062 ntBASIC17.23■□□□□ 0.35
Usp40Q8BWR4 AY036118-201ENSMUST00000200021 923 ntBASIC17.23■□□□□ 0.35
Usp40Q8BWR4 AU022133-201ENSMUST00000200601 873 ntBASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Gm18730-201ENSMUST00000218038 343 ntBASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC17.23■□□□□ 0.35
Usp40Q8BWR4 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 6.3 ms