Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ddx55Q6ZPL9 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ddx55Q6ZPL9 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ddx55Q6ZPL9 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Ddx55Q6ZPL9 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ddx55Q6ZPL9 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Gm24231-201ENSMUST00000104315 133 ntBASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx55Q6ZPL9 Gm11405-201ENSMUST00000118689 1556 ntBASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Gm5847-201ENSMUST00000178959 1595 ntBASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Gm7049-201ENSMUST00000223520 1712 ntBASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Gm27530-201ENSMUST00000184096 98 ntBASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Ighv4-2-201ENSMUST00000192975 362 ntBASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Gm7600-201ENSMUST00000209657 785 ntBASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Gm26448-201ENSMUST00000082446 203 ntBASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Retreg1-206ENSMUST00000228306 1430 ntBASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Pcgf5-211ENSMUST00000225920 6443 ntBASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Ddx55Q6ZPL9 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx55Q6ZPL9 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx55Q6ZPL9 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx55Q6ZPL9 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx55Q6ZPL9 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx55Q6ZPL9 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx55Q6ZPL9 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx55Q6ZPL9 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx55Q6ZPL9 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
Ddx55Q6ZPL9 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx55Q6ZPL9 AC154262.2-201ENSMUST00000224310 2293 ntBASIC14.29□□□□□ -0.12
Ddx55Q6ZPL9 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms