Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Spesp1-201ENSMUST00000056949 3042 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Sp6-201ENSMUST00000047997 3546 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Pnkd-202ENSMUST00000087225 2859 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Gm15770-201ENSMUST00000117498 584 ntBASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Rnf220Q6PDX6 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Dnajc5-203ENSMUST00000108797 3664 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Fgf17-202ENSMUST00000227123 1336 ntBASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Gm15240-201ENSMUST00000118156 720 ntBASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Gm26308-201ENSMUST00000157768 69 ntBASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 AC124732.2-201ENSMUST00000221977 316 ntBASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Gm3695-201ENSMUST00000087222 1009 ntBASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Kir3dl2-202ENSMUST00000113108 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Lrtm2-204ENSMUST00000168793 3407 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Gaa-201ENSMUST00000026666 3363 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Dcun1d3-202ENSMUST00000098080 3072 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Rnf220Q6PDX6 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Gm43273-201ENSMUST00000199649 2594 ntBASIC11.96□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 51.8 ms