Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Gm12341-201ENSMUST00000119724 503 ntBASIC12.06□□□□□ -0.48
Nr1h4Q60641 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
Nr1h4Q60641 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Gm26035-201ENSMUST00000083065 308 ntBASIC12.06□□□□□ -0.48
Nr1h4Q60641 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nr1h4Q60641 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Gm3365-201ENSMUST00000216296 1480 ntBASIC12.06□□□□□ -0.48
Nr1h4Q60641 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Cacna1s-202ENSMUST00000112068 6018 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Gm4735-201ENSMUST00000138679 1302 ntBASIC12.06□□□□□ -0.48
Nr1h4Q60641 Gm5855-201ENSMUST00000200240 1305 ntBASIC12.06□□□□□ -0.48
Nr1h4Q60641 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nr1h4Q60641 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Gm45684-201ENSMUST00000210244 1571 ntBASIC12.05□□□□□ -0.48
Nr1h4Q60641 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Timd4-201ENSMUST00000068877 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 E030026E10Rik-201ENSMUST00000200395 2217 ntBASIC12.05□□□□□ -0.48
Nr1h4Q60641 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Gm14921-201ENSMUST00000118643 908 ntBASIC12.05□□□□□ -0.48
Nr1h4Q60641 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Ldb3-207ENSMUST00000227819 1499 ntBASIC12.05□□□□□ -0.48
Nr1h4Q60641 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nr1h4Q60641 Gm43858-201ENSMUST00000199418 1778 ntBASIC12.05□□□□□ -0.48
Nr1h4Q60641 Gm38049-201ENSMUST00000195698 1372 ntBASIC12.05□□□□□ -0.48
Nr1h4Q60641 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Socs6-201ENSMUST00000070116 6036 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Gm28631-201ENSMUST00000190740 334 ntBASIC12.04□□□□□ -0.48
Nr1h4Q60641 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC12.04□□□□□ -0.48
Nr1h4Q60641 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Gm27177-202ENSMUST00000183514 2703 ntBASIC12.04□□□□□ -0.48
Nr1h4Q60641 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Nr1h4Q60641 AC107453.4-201ENSMUST00000227068 1817 ntBASIC12.04□□□□□ -0.48
Nr1h4Q60641 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Nr1h4Q60641 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 67.2 ms