Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Gm7114-201ENSMUST00000190159 1789 ntBASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Gm24548-201ENSMUST00000158650 108 ntBASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Gm38002-201ENSMUST00000193255 180 ntBASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 AC133598.1-201ENSMUST00000224327 660 ntBASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 AC140406.1-201ENSMUST00000226481 465 ntBASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Gm37827-201ENSMUST00000194486 1542 ntBASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC13.52□□□□□ -0.24
Upf3bQ3ULL6 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Upf3bQ3ULL6 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Upf3bQ3ULL6 Gm38385-201ENSMUST00000194454 2351 ntBASIC13.52□□□□□ -0.24
Upf3bQ3ULL6 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Upf3bQ3ULL6 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Upf3bQ3ULL6 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Gm13392-201ENSMUST00000117708 150 ntBASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Gm11658-201ENSMUST00000120913 1008 ntBASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Gm2467-201ENSMUST00000182266 1010 ntBASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Gm6981-201ENSMUST00000182467 1008 ntBASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Gm27572-201ENSMUST00000183702 255 ntBASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Gm10478-201ENSMUST00000084451 396 ntBASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Gm43858-201ENSMUST00000199418 1778 ntBASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Daam2-202ENSMUST00000224595 1926 ntBASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Gm27196-201ENSMUST00000184787 2582 ntBASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC13.52□□□□□ -0.25
Upf3bQ3ULL6 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 AC154262.2-202ENSMUST00000225158 1331 ntBASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Gm6023-201ENSMUST00000118217 606 ntBASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Gm5863-201ENSMUST00000121760 1008 ntBASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Gm43133-201ENSMUST00000197472 463 ntBASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Rnf17-202ENSMUST00000223627 2077 ntBASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3bQ3ULL6 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms