Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Gm12539-201ENSMUST00000121549 1098 ntBASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Gm42693-201ENSMUST00000196779 631 ntBASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Gm38671-201ENSMUST00000200573 130 ntBASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 AC166051.1-201ENSMUST00000214313 210 ntBASIC12.26□□□□□ -0.45
Usp39Q3TIX9 AC159896.2-201ENSMUST00000214753 269 ntBASIC12.26□□□□□ -0.45
Usp39Q3TIX9 AC154319.1-201ENSMUST00000216330 312 ntBASIC12.26□□□□□ -0.45
Usp39Q3TIX9 AL589735.1-201ENSMUST00000224353 270 ntBASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Gm5912-201ENSMUST00000122282 1438 ntBASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
Usp39Q3TIX9 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 AL645783.1-201ENSMUST00000221416 1832 ntBASIC12.25□□□□□ -0.45
Usp39Q3TIX9 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Gm44758-201ENSMUST00000206096 2068 ntBASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Gm13392-201ENSMUST00000117708 150 ntBASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Gm18916-201ENSMUST00000198264 1246 ntBASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Gm44974-201ENSMUST00000206387 1279 ntBASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Gm38049-201ENSMUST00000195698 1372 ntBASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Usp39Q3TIX9 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Gm11618-201ENSMUST00000117946 267 ntBASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Gm13612-201ENSMUST00000119276 390 ntBASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Gm14660-201ENSMUST00000119809 575 ntBASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Gm8652-201ENSMUST00000181363 964 ntBASIC12.24□□□□□ -0.45
Usp39Q3TIX9 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Gm37424-201ENSMUST00000191727 561 ntBASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Gm37269-201ENSMUST00000193906 1891 ntBASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC12.24□□□□□ -0.45
Usp39Q3TIX9 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC12.24□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 61.4 ms