Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Col6a1Q04857 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Col6a1Q04857 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Col6a1Q04857 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Col6a1Q04857 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
Col6a1Q04857 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Col6a1Q04857 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC13.96□□□□□ -0.17
Col6a1Q04857 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 Gm7002-201ENSMUST00000221386 2165 ntBASIC13.96□□□□□ -0.17
Col6a1Q04857 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC13.96□□□□□ -0.17
Col6a1Q04857 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 Gm4864-201ENSMUST00000219894 1461 ntBASIC13.96□□□□□ -0.17
Col6a1Q04857 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
Col6a1Q04857 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC13.96□□□□□ -0.17
Col6a1Q04857 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC13.96□□□□□ -0.17
Col6a1Q04857 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Col6a1Q04857 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC13.96□□□□□ -0.17
Col6a1Q04857 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC13.96□□□□□ -0.17
Col6a1Q04857 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC13.96□□□□□ -0.17
Col6a1Q04857 AC159819.2-201ENSMUST00000216151 342 ntBASIC13.96□□□□□ -0.17
Col6a1Q04857 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Col6a1Q04857 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Col6a1Q04857 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
Col6a1Q04857 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.18
Col6a1Q04857 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Col6a1Q04857 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Col6a1Q04857 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC13.96□□□□□ -0.18
Col6a1Q04857 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
Col6a1Q04857 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.18
Col6a1Q04857 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Col6a1Q04857 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
Col6a1Q04857 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
Col6a1Q04857 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Col6a1Q04857 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC13.96□□□□□ -0.18
Col6a1Q04857 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Col6a1Q04857 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Col6a1Q04857 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC13.95□□□□□ -0.18
Col6a1Q04857 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Col6a1Q04857 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Col6a1Q04857 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC13.95□□□□□ -0.18
Col6a1Q04857 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Gm37666-201ENSMUST00000194110 866 ntBASIC13.95□□□□□ -0.18
Col6a1Q04857 Gm7207-201ENSMUST00000211575 1067 ntBASIC13.95□□□□□ -0.18
Col6a1Q04857 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC13.95□□□□□ -0.18
Col6a1Q04857 AC154222.2-201ENSMUST00000225848 607 ntBASIC13.95□□□□□ -0.18
Col6a1Q04857 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Col6a1Q04857 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Gm44891-201ENSMUST00000208817 2223 ntBASIC13.95□□□□□ -0.18
Col6a1Q04857 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
Col6a1Q04857 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col6a1Q04857 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col6a1Q04857 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col6a1Q04857 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col6a1Q04857 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col6a1Q04857 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col6a1Q04857 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col6a1Q04857 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC13.94□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms