Protein–RNA interactions for Protein: Q03358

Msx2, Homeobox protein MSX-2, mousemouse

Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx2Q03358 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Msx2Q03358 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Msx2Q03358 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC12.25□□□□□ -0.45
Msx2Q03358 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC12.25□□□□□ -0.45
Msx2Q03358 Helq-201ENSMUST00000044684 3689 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Msx2Q03358 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC12.25□□□□□ -0.45
Msx2Q03358 Gm13616-201ENSMUST00000120600 222 ntBASIC12.25□□□□□ -0.45
Msx2Q03358 Gm12416-201ENSMUST00000120911 1008 ntBASIC12.25□□□□□ -0.45
Msx2Q03358 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 Gm27989-201ENSMUST00000184721 107 ntBASIC12.25□□□□□ -0.45
Msx2Q03358 Gm7730-201ENSMUST00000212486 454 ntBASIC12.25□□□□□ -0.45
Msx2Q03358 AC139382.1-201ENSMUST00000221402 498 ntBASIC12.25□□□□□ -0.45
Msx2Q03358 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Msx2Q03358 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Msx2Q03358 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC12.25□□□□□ -0.45
Msx2Q03358 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC12.25□□□□□ -0.45
Msx2Q03358 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC12.25□□□□□ -0.45
Msx2Q03358 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Msx2Q03358 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Msx2Q03358 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
Msx2Q03358 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC12.24□□□□□ -0.45
Msx2Q03358 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Msx2Q03358 Gm43984-201ENSMUST00000204572 2864 ntBASIC12.24□□□□□ -0.45
Msx2Q03358 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Msx2Q03358 Tpx2-201ENSMUST00000028969 3654 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Msx2Q03358 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Msx2Q03358 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC12.24□□□□□ -0.45
Msx2Q03358 Gm14350-201ENSMUST00000116642 640 ntBASIC12.24□□□□□ -0.45
Msx2Q03358 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC12.24□□□□□ -0.45
Msx2Q03358 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC12.24□□□□□ -0.45
Msx2Q03358 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Msx2Q03358 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC12.24□□□□□ -0.45
Msx2Q03358 Gm6736-201ENSMUST00000166583 948 ntBASIC12.24□□□□□ -0.45
Msx2Q03358 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Msx2Q03358 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Msx2Q03358 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Msx2Q03358 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC12.24□□□□□ -0.45
Msx2Q03358 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
Msx2Q03358 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Msx2Q03358 Gm6458-201ENSMUST00000211573 635 ntBASIC12.24□□□□□ -0.45
Msx2Q03358 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Msx2Q03358 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Msx2Q03358 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Msx2Q03358 AC159621.2-201ENSMUST00000223519 1326 ntBASIC12.24□□□□□ -0.45
Msx2Q03358 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Msx2Q03358 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Msx2Q03358 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Msx2Q03358 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Msx2Q03358 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC12.24□□□□□ -0.45
Msx2Q03358 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Msx2Q03358 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Msx2Q03358 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC12.24□□□□□ -0.45
Msx2Q03358 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Msx2Q03358 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC12.24□□□□□ -0.45
Msx2Q03358 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Msx2Q03358 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Grpel2-201ENSMUST00000062991 4030 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Msx2Q03358 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 CT573086.2-201ENSMUST00000227277 4992 ntBASIC12.23□□□□□ -0.45
Msx2Q03358 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Gm43727-201ENSMUST00000198021 2647 ntBASIC12.23□□□□□ -0.45
Msx2Q03358 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC12.23□□□□□ -0.45
Msx2Q03358 Gm27306-201ENSMUST00000183970 107 ntBASIC12.23□□□□□ -0.45
Msx2Q03358 Gm28760-201ENSMUST00000185995 736 ntBASIC12.23□□□□□ -0.45
Msx2Q03358 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC12.23□□□□□ -0.45
Msx2Q03358 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Msx2Q03358 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC12.23□□□□□ -0.45
Msx2Q03358 Gm38223-201ENSMUST00000194484 695 ntBASIC12.23□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 72.3 ms