Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Fam212a-201ENSMUST00000048568 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
Col18a1P39061 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Col18a1P39061 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Col18a1P39061 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col18a1P39061 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC16.29■□□□□ 0.2
Col18a1P39061 Cisd3-203ENSMUST00000107585 586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Cbx7-202ENSMUST00000109615 710 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Hist1h2bk-201ENSMUST00000110455 476 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col18a1P39061 1700057H21Rik-202ENSMUST00000154530 506 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Gm22379-201ENSMUST00000157480 131 ntBASIC16.29■□□□□ 0.2
Col18a1P39061 Gm26647-201ENSMUST00000180816 1255 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Gm34379-201ENSMUST00000195036 290 ntBASIC16.29■□□□□ 0.2
Col18a1P39061 Gm42430-201ENSMUST00000197209 616 ntBASIC16.29■□□□□ 0.2
Col18a1P39061 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC16.29■□□□□ 0.2
Col18a1P39061 CT009527.1-201ENSMUST00000224205 339 ntBASIC16.29■□□□□ 0.2
Col18a1P39061 Gm10263-201ENSMUST00000085163 300 ntBASIC16.29■□□□□ 0.2
Col18a1P39061 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC16.29■□□□□ 0.2
Col18a1P39061 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Col18a1P39061 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
Col18a1P39061 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Col18a1P39061 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col18a1P39061 Utp23-202ENSMUST00000136129 779 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Nr5a1os-201ENSMUST00000146954 926 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC16.28■□□□□ 0.2
Col18a1P39061 1700017M07Rik-201ENSMUST00000198307 940 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Gm7504-201ENSMUST00000201449 424 ntBASIC16.28■□□□□ 0.2
Col18a1P39061 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC16.28■□□□□ 0.2
Col18a1P39061 CT010506.1-201ENSMUST00000223673 349 ntBASIC16.28■□□□□ 0.2
Col18a1P39061 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Gm6040-201ENSMUST00000095430 857 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC16.28■□□□□ 0.2
Col18a1P39061 Bcat2-208ENSMUST00000211173 1684 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Col18a1P39061 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Banf2-202ENSMUST00000110032 409 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Gm14270-201ENSMUST00000118388 846 ntBASIC16.28■□□□□ 0.2
Col18a1P39061 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Gm12069-201ENSMUST00000145127 806 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC16.28■□□□□ 0.2
Col18a1P39061 Gm23675-201ENSMUST00000157311 125 ntBASIC16.28■□□□□ 0.2
Col18a1P39061 AC153887.1-201ENSMUST00000219154 1253 ntTSL 5 BASIC16.28■□□□□ 0.2
Col18a1P39061 Banf2-201ENSMUST00000037722 571 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Vmn1r44-201ENSMUST00000089420 1108 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Col18a1P39061 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col18a1P39061 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Col18a1P39061 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col18a1P39061 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col18a1P39061 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col18a1P39061 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col18a1P39061 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col18a1P39061 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col18a1P39061 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col18a1P39061 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col18a1P39061 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC16.27■□□□□ 0.2
Col18a1P39061 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col18a1P39061 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col18a1P39061 Gm29340-201ENSMUST00000188763 3854 ntBASIC16.27■□□□□ 0.2
Col18a1P39061 Gas5-224ENSMUST00000162558 502 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col18a1P39061 1700065I16Rik-201ENSMUST00000185277 512 ntBASIC16.27■□□□□ 0.2
Col18a1P39061 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
Col18a1P39061 BC106175-201ENSMUST00000218578 695 ntTSL 5 BASIC16.27■□□□□ 0.2
Col18a1P39061 BC106175-202ENSMUST00000219344 1213 ntBASIC16.27■□□□□ 0.2
Col18a1P39061 CT009546.1-201ENSMUST00000222573 1120 ntBASIC16.27■□□□□ 0.2
Col18a1P39061 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC16.27■□□□□ 0.19
Col18a1P39061 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Col18a1P39061 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col18a1P39061 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Col18a1P39061 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col18a1P39061 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
Col18a1P39061 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC16.27■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms