Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Col1a1P11087 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Col1a1P11087 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Col1a1P11087 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC14.62□□□□□ -0.07
Col1a1P11087 Gm11511-201ENSMUST00000118146 540 ntBASIC14.62□□□□□ -0.07
Col1a1P11087 Olfr269-ps1-201ENSMUST00000120783 302 ntBASIC14.62□□□□□ -0.07
Col1a1P11087 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC14.62□□□□□ -0.07
Col1a1P11087 Gm23153-201ENSMUST00000175323 313 ntBASIC14.62□□□□□ -0.07
Col1a1P11087 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC14.62□□□□□ -0.07
Col1a1P11087 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Col1a1P11087 Gm44065-201ENSMUST00000203184 3527 ntBASIC14.62□□□□□ -0.07
Col1a1P11087 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col1a1P11087 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
Col1a1P11087 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
Col1a1P11087 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Col1a1P11087 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Gm45779-201ENSMUST00000212189 4064 ntBASIC14.61□□□□□ -0.07
Col1a1P11087 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Col1a1P11087 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC14.61□□□□□ -0.07
Col1a1P11087 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC14.61□□□□□ -0.07
Col1a1P11087 Gm11451-201ENSMUST00000118946 630 ntBASIC14.61□□□□□ -0.07
Col1a1P11087 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC14.61□□□□□ -0.07
Col1a1P11087 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC14.61□□□□□ -0.07
Col1a1P11087 Gm34023-201ENSMUST00000195539 217 ntBASIC14.61□□□□□ -0.07
Col1a1P11087 Gm44980-201ENSMUST00000205826 314 ntBASIC14.61□□□□□ -0.07
Col1a1P11087 Gm45460-201ENSMUST00000211385 1038 ntTSL 5 BASIC14.61□□□□□ -0.07
Col1a1P11087 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC14.61□□□□□ -0.07
Col1a1P11087 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Col1a1P11087 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC14.61□□□□□ -0.07
Col1a1P11087 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC14.61□□□□□ -0.07
Col1a1P11087 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Gm5939-201ENSMUST00000119613 2874 ntBASIC14.61□□□□□ -0.07
Col1a1P11087 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col1a1P11087 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC14.61□□□□□ -0.07
Col1a1P11087 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col1a1P11087 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC14.6□□□□□ -0.07
Col1a1P11087 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col1a1P11087 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Col1a1P11087 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col1a1P11087 Gm43858-201ENSMUST00000199418 1778 ntBASIC14.6□□□□□ -0.07
Col1a1P11087 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col1a1P11087 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
Col1a1P11087 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col1a1P11087 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col1a1P11087 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col1a1P11087 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
Col1a1P11087 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col1a1P11087 Gm13263-201ENSMUST00000121271 838 ntBASIC14.6□□□□□ -0.07
Col1a1P11087 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC14.6□□□□□ -0.07
Col1a1P11087 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
Col1a1P11087 Rn7s6-201ENSMUST00000175005 291 ntBASIC14.6□□□□□ -0.07
Col1a1P11087 Gm5852-201ENSMUST00000194119 1021 ntBASIC14.6□□□□□ -0.07
Col1a1P11087 Gm5542-201ENSMUST00000195485 1089 ntBASIC14.6□□□□□ -0.07
Col1a1P11087 Gm4607-201ENSMUST00000206649 577 ntBASIC14.6□□□□□ -0.07
Col1a1P11087 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC14.6□□□□□ -0.07
Col1a1P11087 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC14.6□□□□□ -0.07
Col1a1P11087 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC14.6□□□□□ -0.07
Col1a1P11087 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col1a1P11087 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms