Protein–RNA interactions for Protein: Q99LI7

Cstf3, Cleavage stimulation factor subunit 3, mousemouse

Known RBP Predictions only

Length 717 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf3Q99LI7 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 Gm13050-201ENSMUST00000122149 1345 ntBASIC12.25□□□□□ -0.45
Cstf3Q99LI7 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC12.25□□□□□ -0.45
Cstf3Q99LI7 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cstf3Q99LI7 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 H2-Pa-201ENSMUST00000182803 626 ntBASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Gm43858-201ENSMUST00000199418 1778 ntBASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Gm18263-201ENSMUST00000220846 1928 ntBASIC12.24□□□□□ -0.45
Cstf3Q99LI7 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 AC155237.1-201ENSMUST00000226196 1279 ntBASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 n-R5s77-201ENSMUST00000083757 119 ntBASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC12.24□□□□□ -0.45
Cstf3Q99LI7 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Gm13369-201ENSMUST00000119442 987 ntBASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Gm12138-201ENSMUST00000122180 951 ntBASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Gm17208-201ENSMUST00000168388 535 ntBASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Gm27486-201ENSMUST00000184923 80 ntBASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Gm7063-201ENSMUST00000186840 981 ntBASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Gm9794-201ENSMUST00000202370 423 ntBASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cstf3Q99LI7 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 64.8 ms