Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Gm43931-201ENSMUST00000204817 2870 ntBASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Spata2-201ENSMUST00000057627 4012 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Gm5320-201ENSMUST00000207163 1519 ntBASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Gm37931-201ENSMUST00000194686 2866 ntBASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Gm6736-201ENSMUST00000166583 948 ntBASIC12□□□□□ -0.49
Rnf220Q6PDX6 Gm25948-201ENSMUST00000175334 112 ntBASIC12□□□□□ -0.49
Rnf220Q6PDX6 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Gm27321-201ENSMUST00000185021 205 ntBASIC12□□□□□ -0.49
Rnf220Q6PDX6 Gm44344-201ENSMUST00000200287 129 ntBASIC12□□□□□ -0.49
Rnf220Q6PDX6 Gm43703-201ENSMUST00000200523 763 ntBASIC12□□□□□ -0.49
Rnf220Q6PDX6 Olfr5-202ENSMUST00000209866 2980 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Rbfox2-208ENSMUST00000227930 1218 ntBASIC12□□□□□ -0.49
Rnf220Q6PDX6 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 AC159195.3-201ENSMUST00000225162 2211 ntBASIC12□□□□□ -0.49
Rnf220Q6PDX6 Oplah-209ENSMUST00000171340 4085 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Shoc2-201ENSMUST00000025932 4106 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Gm2238-201ENSMUST00000192074 3669 ntBASIC12□□□□□ -0.49
Rnf220Q6PDX6 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Pcdhb2-201ENSMUST00000056522 2813 ntAPPRIS P1 BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Rnf220Q6PDX6 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Ccdc57-201ENSMUST00000056781 3403 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 P2ry1-201ENSMUST00000029331 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 BC043934-202ENSMUST00000185694 2356 ntBASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Gm17029-203ENSMUST00000153443 2758 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 AC124751.1-201ENSMUST00000222716 1408 ntBASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Ces4a-201ENSMUST00000161289 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Rpap2-204ENSMUST00000112654 2914 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Mmel1-202ENSMUST00000080559 2926 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Rnf220Q6PDX6 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 75.8 ms