Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Gm13813-201ENSMUST00000120998 787 ntBASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Gm26035-201ENSMUST00000083065 308 ntBASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Gm9522-201ENSMUST00000182394 926 ntBASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 AC135669.1-202ENSMUST00000216742 540 ntBASIC11.86□□□□□ -0.51
Trim40Q3UWA4 AC139382.1-201ENSMUST00000221402 498 ntBASIC11.86□□□□□ -0.51
Trim40Q3UWA4 AC126408.1-201ENSMUST00000225184 523 ntBASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim40Q3UWA4 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 59.2 ms