Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Limch1Q3UH68 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Gm15236-201ENSMUST00000117309 379 ntBASIC14.9□□□□□ -0.02
Limch1Q3UH68 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Gm14704-201ENSMUST00000120300 874 ntBASIC14.9□□□□□ -0.02
Limch1Q3UH68 Gm11637-201ENSMUST00000120601 592 ntBASIC14.9□□□□□ -0.02
Limch1Q3UH68 Gm2231-201ENSMUST00000125661 612 ntBASIC14.9□□□□□ -0.02
Limch1Q3UH68 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC14.9□□□□□ -0.02
Limch1Q3UH68 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC14.9□□□□□ -0.02
Limch1Q3UH68 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Gm43356-201ENSMUST00000196582 609 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Cts7-204ENSMUST00000225321 1257 ntBASIC14.9□□□□□ -0.02
Limch1Q3UH68 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Gm14921-201ENSMUST00000118643 908 ntBASIC14.89□□□□□ -0.03
Limch1Q3UH68 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Gm16379-201ENSMUST00000161469 348 ntBASIC14.89□□□□□ -0.03
Limch1Q3UH68 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Gm8762-201ENSMUST00000193486 339 ntBASIC14.89□□□□□ -0.03
Limch1Q3UH68 Gm38341-201ENSMUST00000195357 515 ntBASIC14.89□□□□□ -0.03
Limch1Q3UH68 Gm42790-201ENSMUST00000201268 969 ntBASIC14.89□□□□□ -0.03
Limch1Q3UH68 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Gm44942-201ENSMUST00000096093 2072 ntBASIC14.89□□□□□ -0.03
Limch1Q3UH68 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
Limch1Q3UH68 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Gm22121-201ENSMUST00000175148 54 ntBASIC14.88□□□□□ -0.03
Limch1Q3UH68 Gm18056-201ENSMUST00000207670 568 ntBASIC14.88□□□□□ -0.03
Limch1Q3UH68 Gm18061-201ENSMUST00000208350 562 ntBASIC14.88□□□□□ -0.03
Limch1Q3UH68 Gm18063-201ENSMUST00000208529 568 ntBASIC14.88□□□□□ -0.03
Limch1Q3UH68 Gm18052-201ENSMUST00000208750 559 ntBASIC14.88□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 68.4 ms