Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Gm6244-201ENSMUST00000178732 841 ntBASIC12.32□□□□□ -0.44
Col28a1Q2UY11 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 AC156560.2-201ENSMUST00000221232 264 ntBASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Gm37437-201ENSMUST00000194451 1937 ntBASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Gm6447-201ENSMUST00000118905 835 ntBASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Gm8835-201ENSMUST00000173096 1169 ntBASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Gm7067-201ENSMUST00000207698 1249 ntBASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Gm43417-201ENSMUST00000201586 5207 ntBASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Col28a1Q2UY11 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Mbnl2-204ENSMUST00000227012 2390 ntBASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Gm43365-201ENSMUST00000196522 2106 ntBASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 AC073947.2-201ENSMUST00000215888 1130 ntBASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Gm1995-201ENSMUST00000220838 2602 ntBASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col28a1Q2UY11 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Gm9816-201ENSMUST00000122292 1414 ntBASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 83.1 ms