Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC10.95□□□□□ -0.66
Nkx3-1P97436 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Gm12217-201ENSMUST00000118858 696 ntBASIC10.95□□□□□ -0.66
Nkx3-1P97436 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC10.95□□□□□ -0.66
Nkx3-1P97436 B9d1os-201ENSMUST00000137010 674 ntBASIC10.95□□□□□ -0.66
Nkx3-1P97436 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC10.95□□□□□ -0.66
Nkx3-1P97436 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Gm27023-201ENSMUST00000182372 285 ntBASIC10.95□□□□□ -0.66
Nkx3-1P97436 Mir6927-201ENSMUST00000184494 71 ntBASIC10.95□□□□□ -0.66
Nkx3-1P97436 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Abhd11os-203ENSMUST00000222613 363 ntBASIC10.95□□□□□ -0.66
Nkx3-1P97436 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC10.95□□□□□ -0.66
Nkx3-1P97436 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Gm14208-201ENSMUST00000119645 678 ntBASIC10.94□□□□□ -0.66
Nkx3-1P97436 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Gm8856-201ENSMUST00000185254 1144 ntBASIC10.94□□□□□ -0.66
Nkx3-1P97436 Gm44651-201ENSMUST00000207343 372 ntBASIC10.94□□□□□ -0.66
Nkx3-1P97436 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC10.94□□□□□ -0.66
Nkx3-1P97436 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Gm37644-201ENSMUST00000192190 2270 ntBASIC10.94□□□□□ -0.66
Nkx3-1P97436 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Gm37324-201ENSMUST00000194500 4504 ntBASIC10.94□□□□□ -0.66
Nkx3-1P97436 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
Nkx3-1P97436 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Nkx3-1P97436 Gm43908-201ENSMUST00000205074 1472 ntBASIC10.93□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms