Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cux1P53564 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC19.13■□□□□ 0.65
Cux1P53564 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Cux1P53564 Gm18711-201ENSMUST00000199341 750 ntBASIC19.13■□□□□ 0.65
Cux1P53564 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Cux1P53564 Gm8956-201ENSMUST00000203939 825 ntBASIC19.13■□□□□ 0.65
Cux1P53564 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC19.13■□□□□ 0.65
Cux1P53564 AC171241.1-201ENSMUST00000228144 1166 ntBASIC19.13■□□□□ 0.65
Cux1P53564 Gm5705-201ENSMUST00000066241 711 ntBASIC19.13■□□□□ 0.65
Cux1P53564 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Cux1P53564 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cux1P53564 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cux1P53564 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC19.13■□□□□ 0.65
Cux1P53564 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Cux1P53564 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Cux1P53564 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Cux1P53564 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC19.13■□□□□ 0.65
Cux1P53564 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cux1P53564 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Cux1P53564 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 Matn2-206ENSMUST00000228570 2798 ntBASIC19.12■□□□□ 0.65
Cux1P53564 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Cux1P53564 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC19.12■□□□□ 0.65
Cux1P53564 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 Gm11246-201ENSMUST00000120880 345 ntBASIC19.12■□□□□ 0.65
Cux1P53564 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC19.12■□□□□ 0.65
Cux1P53564 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC19.12■□□□□ 0.65
Cux1P53564 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 Gm43520-201ENSMUST00000197996 164 ntBASIC19.12■□□□□ 0.65
Cux1P53564 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC19.12■□□□□ 0.65
Cux1P53564 Gm7395-201ENSMUST00000216059 1045 ntBASIC19.12■□□□□ 0.65
Cux1P53564 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC19.12■□□□□ 0.65
Cux1P53564 AC166344.1-201ENSMUST00000223745 674 ntBASIC19.12■□□□□ 0.65
Cux1P53564 Snora73b-201ENSMUST00000083419 205 ntBASIC19.12■□□□□ 0.65
Cux1P53564 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
Cux1P53564 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Cux1P53564 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Cux1P53564 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Cux1P53564 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cux1P53564 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Cux1P53564 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
Cux1P53564 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Cux1P53564 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cux1P53564 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Cux1P53564 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC19.11■□□□□ 0.65
Cux1P53564 Gm17135-201ENSMUST00000167009 564 ntTSL 3 BASIC19.11■□□□□ 0.65
Cux1P53564 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cux1P53564 Gm17831-201ENSMUST00000205579 900 ntBASIC19.11■□□□□ 0.65
Cux1P53564 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC19.11■□□□□ 0.65
Cux1P53564 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Cux1P53564 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cux1P53564 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cux1P53564 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cux1P53564 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Cux1P53564 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC19.11■□□□□ 0.65
Cux1P53564 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cux1P53564 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Cux1P53564 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Cux1P53564 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC19.11■□□□□ 0.65
Cux1P53564 Gm10152-201ENSMUST00000193475 1344 ntBASIC19.11■□□□□ 0.65
Cux1P53564 AC154671.1-201ENSMUST00000228617 1578 ntBASIC19.11■□□□□ 0.65
Cux1P53564 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Cux1P53564 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Cux1P53564 Grk6-205ENSMUST00000224653 2976 ntBASIC19.11■□□□□ 0.65
Cux1P53564 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Cux1P53564 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Cux1P53564 Gm8731-201ENSMUST00000118088 412 ntBASIC19.1■□□□□ 0.65
Cux1P53564 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC19.1■□□□□ 0.65
Cux1P53564 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Cux1P53564 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Cux1P53564 Gm28686-201ENSMUST00000187404 609 ntBASIC19.1■□□□□ 0.65
Cux1P53564 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC19.1■□□□□ 0.65
Cux1P53564 Gm18974-201ENSMUST00000221478 1031 ntBASIC19.1■□□□□ 0.65
Cux1P53564 CT030637.1-201ENSMUST00000228016 669 ntBASIC19.1■□□□□ 0.65
Cux1P53564 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC19.1■□□□□ 0.65
Cux1P53564 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Cux1P53564 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Cux1P53564 Gm9129-201ENSMUST00000218173 1689 ntBASIC19.1■□□□□ 0.65
Cux1P53564 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Cux1P53564 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Cux1P53564 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Cux1P53564 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Cux1P53564 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Cux1P53564 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms