Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gm26083-201ENSMUST00000157904 193 ntBASIC13.38□□□□□ -0.27
Shmt1P50431 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC13.38□□□□□ -0.27
Shmt1P50431 Gm37259-201ENSMUST00000193903 849 ntBASIC13.38□□□□□ -0.27
Shmt1P50431 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 AC166095.1-201ENSMUST00000223731 1241 ntBASIC13.38□□□□□ -0.27
Shmt1P50431 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Shmt1P50431 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC13.37□□□□□ -0.27
Shmt1P50431 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Shmt1P50431 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Shmt1P50431 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC13.37□□□□□ -0.27
Shmt1P50431 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 Gm24255-201ENSMUST00000104481 128 ntBASIC13.37□□□□□ -0.27
Shmt1P50431 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC13.37□□□□□ -0.27
Shmt1P50431 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 Gm5597-201ENSMUST00000182353 1193 ntBASIC13.37□□□□□ -0.27
Shmt1P50431 Gm21769-201ENSMUST00000211922 111 ntBASIC13.37□□□□□ -0.27
Shmt1P50431 Gm30285-201ENSMUST00000214614 422 ntBASIC13.37□□□□□ -0.27
Shmt1P50431 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC13.37□□□□□ -0.27
Shmt1P50431 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Shmt1P50431 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Shmt1P50431 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC13.36□□□□□ -0.27
Shmt1P50431 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Shmt1P50431 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Gm15808-201ENSMUST00000119046 604 ntBASIC13.36□□□□□ -0.27
Shmt1P50431 Gm25043-201ENSMUST00000158604 212 ntBASIC13.36□□□□□ -0.27
Shmt1P50431 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Shmt1P50431 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC13.36□□□□□ -0.27
Shmt1P50431 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC13.36□□□□□ -0.27
Shmt1P50431 Ighv1-62-201ENSMUST00000193406 350 ntBASIC13.36□□□□□ -0.27
Shmt1P50431 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Gm39404-201ENSMUST00000216350 313 ntBASIC13.36□□□□□ -0.27
Shmt1P50431 AC122371.3-201ENSMUST00000223402 1061 ntBASIC13.36□□□□□ -0.27
Shmt1P50431 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC13.36□□□□□ -0.27
Shmt1P50431 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC13.36□□□□□ -0.27
Shmt1P50431 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Shmt1P50431 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC13.36□□□□□ -0.27
Shmt1P50431 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Shmt1P50431 Gm26616-202ENSMUST00000195676 3107 ntBASIC13.36□□□□□ -0.27
Shmt1P50431 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Shmt1P50431 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Shmt1P50431 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Shmt1P50431 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Shmt1P50431 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Shmt1P50431 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Shmt1P50431 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Shmt1P50431 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
Shmt1P50431 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Shmt1P50431 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Shmt1P50431 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Shmt1P50431 Mir877-201ENSMUST00000104738 85 ntBASIC13.35□□□□□ -0.27
Shmt1P50431 Gm15236-201ENSMUST00000117309 379 ntBASIC13.35□□□□□ -0.27
Shmt1P50431 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Shmt1P50431 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC13.35□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms