Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Rfx3P48381 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Rfx3P48381 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Rfx3P48381 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Rfx3P48381 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC11.45□□□□□ -0.58
Rfx3P48381 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC11.45□□□□□ -0.58
Rfx3P48381 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Rfx3P48381 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Rfx3P48381 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Rfx3P48381 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Rfx3P48381 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC11.45□□□□□ -0.58
Rfx3P48381 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Rfx3P48381 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Rfx3P48381 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Rfx3P48381 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Gm44806-201ENSMUST00000205574 2303 ntBASIC11.44□□□□□ -0.58
Rfx3P48381 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
Rfx3P48381 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Rfx3P48381 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC11.44□□□□□ -0.58
Rfx3P48381 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Rfx3P48381 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC11.44□□□□□ -0.58
Rfx3P48381 Gm13612-201ENSMUST00000119276 390 ntBASIC11.44□□□□□ -0.58
Rfx3P48381 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC11.44□□□□□ -0.58
Rfx3P48381 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Gm45384-201ENSMUST00000210451 277 ntBASIC11.44□□□□□ -0.58
Rfx3P48381 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Gm7653-201ENSMUST00000214567 508 ntBASIC11.44□□□□□ -0.58
Rfx3P48381 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC11.44□□□□□ -0.58
Rfx3P48381 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 AL645783.1-201ENSMUST00000221416 1832 ntBASIC11.44□□□□□ -0.58
Rfx3P48381 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC11.44□□□□□ -0.58
Rfx3P48381 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC11.44□□□□□ -0.58
Rfx3P48381 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Rfx3P48381 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Gm15222-202ENSMUST00000228667 1726 ntBASIC11.43□□□□□ -0.58
Rfx3P48381 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Rfx3P48381 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Rfx3P48381 AC101945.2-201ENSMUST00000227886 1377 ntBASIC11.43□□□□□ -0.58
Rfx3P48381 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC11.43□□□□□ -0.58
Rfx3P48381 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Gm9124-201ENSMUST00000191789 1092 ntBASIC11.43□□□□□ -0.58
Rfx3P48381 Gm9113-201ENSMUST00000192510 1018 ntBASIC11.43□□□□□ -0.58
Rfx3P48381 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC11.43□□□□□ -0.58
Rfx3P48381 Gm9131-201ENSMUST00000193557 1089 ntBASIC11.43□□□□□ -0.58
Rfx3P48381 Gm9121-201ENSMUST00000193749 1071 ntBASIC11.43□□□□□ -0.58
Rfx3P48381 Gm7287-201ENSMUST00000205267 602 ntBASIC11.43□□□□□ -0.58
Rfx3P48381 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC11.43□□□□□ -0.58
Rfx3P48381 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC11.43□□□□□ -0.58
Rfx3P48381 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC11.43□□□□□ -0.58
Rfx3P48381 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Rfx3P48381 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Rfx3P48381 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Rfx3P48381 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms