Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 A430010J10Rik-201ENSMUST00000054470 408 ntBASIC15.1■□□□□ 0.01
Rfx1P48377 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC15.1■□□□□ 0.01
Rfx1P48377 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC15.1■□□□□ 0.01
Rfx1P48377 CT009713.10-201ENSMUST00000225013 1986 ntBASIC15.1■□□□□ 0.01
Rfx1P48377 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Gm18983-201ENSMUST00000222884 2729 ntBASIC15.1■□□□□ 0.01
Rfx1P48377 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 CT025678.1-201ENSMUST00000214795 2972 ntBASIC15.1■□□□□ 0.01
Rfx1P48377 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Rfx1P48377 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC15.1■□□□□ 0.01
Rfx1P48377 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 AC157950.1-201ENSMUST00000217561 2168 ntBASIC15.09■□□□□ 0.01
Rfx1P48377 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
Rfx1P48377 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC15.09■□□□□ 0.01
Rfx1P48377 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Rfx1P48377 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Gm5687-201ENSMUST00000118252 640 ntBASIC15.09■□□□□ 0.01
Rfx1P48377 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC15.09■□□□□ 0.01
Rfx1P48377 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC15.09■□□□□ 0.01
Rfx1P48377 Gm44397-201ENSMUST00000195950 113 ntBASIC15.09■□□□□ 0.01
Rfx1P48377 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC15.09■□□□□ 0.01
Rfx1P48377 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC15.09■□□□□ 0.01
Rfx1P48377 AC166051.1-201ENSMUST00000214313 210 ntBASIC15.09■□□□□ 0.01
Rfx1P48377 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC15.09■□□□□ 0.01
Rfx1P48377 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC15.09■□□□□ 0.01
Rfx1P48377 AC124732.1-201ENSMUST00000221551 910 ntBASIC15.09■□□□□ 0.01
Rfx1P48377 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rfx1P48377 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Rfx1P48377 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Rfx1P48377 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC15.08■□□□□ 0.01
Rfx1P48377 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Rfx1P48377 AC154517.2-201ENSMUST00000220829 2458 ntBASIC15.08■□□□□ 0.01
Rfx1P48377 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Rfx1P48377 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Rfx1P48377 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC15.08■□□□□ 0.01
Rfx1P48377 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Rfx1P48377 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
Rfx1P48377 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Rfx1P48377 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Rfx1P48377 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC15.08■□□□□ 0
Rfx1P48377 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC15.08■□□□□ 0
Rfx1P48377 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC15.08■□□□□ 0
Rfx1P48377 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC15.08■□□□□ 0
Rfx1P48377 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC15.08■□□□□ 0
Rfx1P48377 Gm16215-201ENSMUST00000161990 637 ntBASIC15.08■□□□□ 0
Rfx1P48377 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
Rfx1P48377 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC15.08■□□□□ 0
Rfx1P48377 Gm29179-208ENSMUST00000190450 1137 ntTSL 5 BASIC15.08■□□□□ 0
Rfx1P48377 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC15.08■□□□□ 0
Rfx1P48377 Gm18307-201ENSMUST00000206864 949 ntBASIC15.08■□□□□ 0
Rfx1P48377 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Rfx1P48377 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC15.08■□□□□ 0
Rfx1P48377 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Rfx1P48377 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC15.08■□□□□ 0
Rfx1P48377 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Rfx1P48377 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC15.08■□□□□ 0
Rfx1P48377 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC15.08■□□□□ 0
Rfx1P48377 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC15.08■□□□□ 0
Rfx1P48377 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Rfx1P48377 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC15.08■□□□□ 0
Rfx1P48377 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC15.08■□□□□ 0
Rfx1P48377 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Rfx1P48377 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC15.08■□□□□ 0
Rfx1P48377 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Rfx1P48377 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Rfx1P48377 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Rfx1P48377 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC15.07■□□□□ 0
Rfx1P48377 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC15.07■□□□□ 0
Rfx1P48377 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Rfx1P48377 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 65.5 ms