Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Lire1P11260 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC12.08□□□□□ -0.48
Lire1P11260 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC12.08□□□□□ -0.48
Lire1P11260 Gm6983-201ENSMUST00000214912 628 ntBASIC12.08□□□□□ -0.48
Lire1P11260 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Lire1P11260 Kif2c-202ENSMUST00000106436 2378 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Lire1P11260 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC12.08□□□□□ -0.48
Lire1P11260 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Lire1P11260 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Lire1P11260 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Lire1P11260 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 CT573086.2-201ENSMUST00000227277 4992 ntBASIC12.08□□□□□ -0.48
Lire1P11260 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Nynrin-201ENSMUST00000100529 6990 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Gm8337-201ENSMUST00000187358 1938 ntBASIC12.07□□□□□ -0.48
Lire1P11260 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC12.07□□□□□ -0.48
Lire1P11260 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC12.07□□□□□ -0.48
Lire1P11260 Gm12416-201ENSMUST00000120911 1008 ntBASIC12.07□□□□□ -0.48
Lire1P11260 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC12.07□□□□□ -0.48
Lire1P11260 Gm8062-201ENSMUST00000139696 444 ntBASIC12.07□□□□□ -0.48
Lire1P11260 Gm5475-202ENSMUST00000148928 2320 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Gm26464-201ENSMUST00000157094 305 ntBASIC12.07□□□□□ -0.48
Lire1P11260 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC12.07□□□□□ -0.48
Lire1P11260 Gm8652-201ENSMUST00000181363 964 ntBASIC12.07□□□□□ -0.48
Lire1P11260 Gm37849-201ENSMUST00000194722 1881 ntBASIC12.07□□□□□ -0.48
Lire1P11260 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC12.07□□□□□ -0.48
Lire1P11260 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC12.07□□□□□ -0.48
Lire1P11260 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Lire1P11260 Gm10012-201ENSMUST00000078252 192 ntBASIC12.07□□□□□ -0.48
Lire1P11260 Gm8399-201ENSMUST00000082300 1117 ntBASIC12.07□□□□□ -0.48
Lire1P11260 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC12.07□□□□□ -0.48
Lire1P11260 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC12.07□□□□□ -0.48
Lire1P11260 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Lire1P11260 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC12.07□□□□□ -0.48
Lire1P11260 1700030K09Rik-202ENSMUST00000121902 2373 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Lire1P11260 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Gm5380-201ENSMUST00000119296 2136 ntBASIC12.07□□□□□ -0.48
Lire1P11260 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lire1P11260 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Radil-203ENSMUST00000110784 3106 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Gpr179-201ENSMUST00000093942 9219 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Lire1P11260 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC12.06□□□□□ -0.48
Lire1P11260 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC12.06□□□□□ -0.48
Lire1P11260 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC12.06□□□□□ -0.48
Lire1P11260 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Lire1P11260 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Gm43064-201ENSMUST00000199710 3144 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Lire1P11260 Mir698-201ENSMUST00000102164 109 ntBASIC12.06□□□□□ -0.48
Lire1P11260 Gm12384-201ENSMUST00000119228 919 ntBASIC12.06□□□□□ -0.48
Lire1P11260 Gm16342-201ENSMUST00000124025 1025 ntBASIC12.06□□□□□ -0.48
Lire1P11260 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC12.06□□□□□ -0.48
Lire1P11260 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC12.06□□□□□ -0.48
Lire1P11260 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC12.06□□□□□ -0.48
Lire1P11260 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC12.06□□□□□ -0.48
Lire1P11260 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
Lire1P11260 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
Lire1P11260 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Gm24196-201ENSMUST00000179161 110 ntBASIC12.06□□□□□ -0.48
Lire1P11260 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC12.06□□□□□ -0.48
Lire1P11260 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms