Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col1a1P11087 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC14.65□□□□□ -0.06
Col1a1P11087 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col1a1P11087 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
Col1a1P11087 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Col1a1P11087 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Col1a1P11087 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC14.65□□□□□ -0.06
Col1a1P11087 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col1a1P11087 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col1a1P11087 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col1a1P11087 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col1a1P11087 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col1a1P11087 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col1a1P11087 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col1a1P11087 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Col1a1P11087 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
Col1a1P11087 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Col1a1P11087 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Gm15595-201ENSMUST00000120840 961 ntBASIC14.64□□□□□ -0.07
Col1a1P11087 Gm11675-201ENSMUST00000121873 832 ntBASIC14.64□□□□□ -0.07
Col1a1P11087 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC14.64□□□□□ -0.07
Col1a1P11087 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC14.64□□□□□ -0.07
Col1a1P11087 Gm42629-201ENSMUST00000199063 1102 ntBASIC14.64□□□□□ -0.07
Col1a1P11087 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC14.64□□□□□ -0.07
Col1a1P11087 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC14.64□□□□□ -0.07
Col1a1P11087 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC14.64□□□□□ -0.07
Col1a1P11087 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
Col1a1P11087 Gm38391-201ENSMUST00000191720 4069 ntBASIC14.64□□□□□ -0.07
Col1a1P11087 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC14.64□□□□□ -0.07
Col1a1P11087 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC14.64□□□□□ -0.07
Col1a1P11087 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Gm10176-201ENSMUST00000159707 2264 ntBASIC14.64□□□□□ -0.07
Col1a1P11087 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col1a1P11087 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC14.63□□□□□ -0.07
Col1a1P11087 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC14.63□□□□□ -0.07
Col1a1P11087 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
Col1a1P11087 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Gm8492-201ENSMUST00000182375 987 ntBASIC14.63□□□□□ -0.07
Col1a1P11087 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Col1a1P11087 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Col1a1P11087 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 AC169511.2-201ENSMUST00000226674 2063 ntBASIC14.63□□□□□ -0.07
Col1a1P11087 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC14.63□□□□□ -0.07
Col1a1P11087 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Col1a1P11087 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC14.63□□□□□ -0.07
Col1a1P11087 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Col1a1P11087 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Col1a1P11087 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC14.63□□□□□ -0.07
Col1a1P11087 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
Col1a1P11087 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Col1a1P11087 Gm2517-201ENSMUST00000215651 348 ntBASIC14.63□□□□□ -0.07
Col1a1P11087 Gm7395-201ENSMUST00000216059 1045 ntBASIC14.63□□□□□ -0.07
Col1a1P11087 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col1a1P11087 Snora73b-201ENSMUST00000083419 205 ntBASIC14.63□□□□□ -0.07
Col1a1P11087 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC14.63□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 71.9 ms