Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Nudt18-202ENSMUST00000228554 3619 ntBASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Gm8798-201ENSMUST00000211877 1661 ntBASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Gm8062-201ENSMUST00000139696 444 ntBASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Gm26927-201ENSMUST00000182385 965 ntBASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Gm5620-201ENSMUST00000077991 1348 ntBASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Chmp6P0C0A3 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Gm12363-201ENSMUST00000122250 668 ntBASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Gm37042-201ENSMUST00000193816 581 ntBASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Gm4768-201ENSMUST00000206199 686 ntBASIC13.79□□□□□ -0.2
Chmp6P0C0A3 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Tyms-ps-201ENSMUST00000219550 915 ntBASIC13.79□□□□□ -0.2
Chmp6P0C0A3 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Gm8706-201ENSMUST00000197372 1491 ntBASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Gm43677-201ENSMUST00000198098 2378 ntBASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Gm38157-201ENSMUST00000194178 1698 ntBASIC13.79□□□□□ -0.2
Chmp6P0C0A3 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Chmp6P0C0A3 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Chmp6P0C0A3 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Gm10728-201ENSMUST00000194292 1829 ntBASIC13.78□□□□□ -0.2
Chmp6P0C0A3 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Chmp6P0C0A3 CT009713.10-201ENSMUST00000225013 1986 ntBASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Gm14704-201ENSMUST00000120300 874 ntBASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Chmp6P0C0A3 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Ighv8-10-201ENSMUST00000199579 358 ntBASIC13.78□□□□□ -0.2
Chmp6P0C0A3 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC13.78□□□□□ -0.2
Chmp6P0C0A3 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms