Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scn11aQ9R053 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Scn11aQ9R053 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC14.78□□□□□ -0.04
Scn11aQ9R053 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Gm13035-201ENSMUST00000117496 342 ntBASIC14.78□□□□□ -0.04
Scn11aQ9R053 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Gm28323-201ENSMUST00000186817 2499 ntBASIC14.78□□□□□ -0.04
Scn11aQ9R053 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC14.78□□□□□ -0.04
Scn11aQ9R053 Gm807-202ENSMUST00000224929 408 ntBASIC14.78□□□□□ -0.04
Scn11aQ9R053 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scn11aQ9R053 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
Scn11aQ9R053 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC14.77□□□□□ -0.04
Scn11aQ9R053 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Scn11aQ9R053 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Scn11aQ9R053 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Scn11aQ9R053 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Scn11aQ9R053 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Scn11aQ9R053 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Scn11aQ9R053 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Scn11aQ9R053 AC116503.1-201ENSMUST00000215445 2192 ntBASIC14.77□□□□□ -0.04
Scn11aQ9R053 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC14.77□□□□□ -0.04
Scn11aQ9R053 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Scn11aQ9R053 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Scn11aQ9R053 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Scn11aQ9R053 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Scn11aQ9R053 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Scn11aQ9R053 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Scn11aQ9R053 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
Scn11aQ9R053 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Scn11aQ9R053 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Scn11aQ9R053 Gm14460-201ENSMUST00000121511 639 ntBASIC14.77□□□□□ -0.05
Scn11aQ9R053 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Scn11aQ9R053 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Scn11aQ9R053 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Scn11aQ9R053 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Scn11aQ9R053 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Scn11aQ9R053 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Scn11aQ9R053 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Scn11aQ9R053 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Scn11aQ9R053 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Scn11aQ9R053 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Scn11aQ9R053 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Scn11aQ9R053 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Scn11aQ9R053 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Scn11aQ9R053 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Scn11aQ9R053 E330023G01Rik-201ENSMUST00000186387 1483 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Scn11aQ9R053 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Scn11aQ9R053 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Scn11aQ9R053 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Scn11aQ9R053 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Scn11aQ9R053 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Scn11aQ9R053 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Scn11aQ9R053 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Scn11aQ9R053 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Scn11aQ9R053 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC14.76□□□□□ -0.05
Scn11aQ9R053 Cd63-ps-202ENSMUST00000154992 717 ntBASIC14.76□□□□□ -0.05
Scn11aQ9R053 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC14.76□□□□□ -0.05
Scn11aQ9R053 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
Scn11aQ9R053 Gm44552-201ENSMUST00000205458 1247 ntBASIC14.76□□□□□ -0.05
Scn11aQ9R053 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC14.76□□□□□ -0.05
Scn11aQ9R053 CT009713.8-201ENSMUST00000225448 560 ntBASIC14.76□□□□□ -0.05
Scn11aQ9R053 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Scn11aQ9R053 Rab7-201ENSMUST00000095048 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Scn11aQ9R053 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Scn11aQ9R053 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Scn11aQ9R053 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Scn11aQ9R053 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Scn11aQ9R053 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Scn11aQ9R053 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Scn11aQ9R053 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Scn11aQ9R053 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Scn11aQ9R053 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
Scn11aQ9R053 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC14.75□□□□□ -0.05
Scn11aQ9R053 Gm12501-201ENSMUST00000119163 529 ntBASIC14.75□□□□□ -0.05
Scn11aQ9R053 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Scn11aQ9R053 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
Scn11aQ9R053 Gm6771-201ENSMUST00000182716 1001 ntBASIC14.75□□□□□ -0.05
Scn11aQ9R053 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Scn11aQ9R053 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Scn11aQ9R053 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Scn11aQ9R053 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Scn11aQ9R053 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Scn11aQ9R053 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Scn11aQ9R053 Gm9072-201ENSMUST00000218390 1514 ntBASIC14.75□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 65.5 ms