Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Gm15429-201ENSMUST00000151268 798 ntBASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Gm7446-201ENSMUST00000221035 1240 ntBASIC12.52□□□□□ -0.41
Lima1Q9ERG0 AC154305.4-201ENSMUST00000224520 614 ntBASIC12.52□□□□□ -0.41
Lima1Q9ERG0 AC169036.1-201ENSMUST00000227994 296 ntBASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Lima1Q9ERG0 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Gm2420-201ENSMUST00000119864 2149 ntBASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lima1Q9ERG0 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 AC156031.2-201ENSMUST00000213107 3310 ntBASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Gm5638-201ENSMUST00000118618 1258 ntBASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Gm6447-201ENSMUST00000118905 835 ntBASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Gm18018-201ENSMUST00000198273 408 ntBASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Gm10040-201ENSMUST00000080726 1662 ntBASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms