Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Gm44152-201ENSMUST00000205007 1691 ntBASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Gm15886-201ENSMUST00000123155 1250 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Saxo2-202ENSMUST00000126478 430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 C330019F10Rik-201ENSMUST00000149428 459 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Gm26555-201ENSMUST00000180452 1037 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Gm16938-201ENSMUST00000180517 464 ntTSL 5 BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Gm26976-201ENSMUST00000182929 908 ntBASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Gm37826-201ENSMUST00000195329 322 ntBASIC16.81■□□□□ 0.28
Scn4aQ9ER60 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Cfap61-201ENSMUST00000116398 1561 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Syngr4-202ENSMUST00000120299 722 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Gm11244-201ENSMUST00000121243 237 ntBASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Gm15196-201ENSMUST00000121406 482 ntBASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 CT009527.1-201ENSMUST00000224205 339 ntBASIC16.8■□□□□ 0.28
Scn4aQ9ER60 AC093022.5-201ENSMUST00000226841 1079 ntBASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Smok4a-201ENSMUST00000074512 1455 ntBASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Gm45012-201ENSMUST00000208323 1666 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Ighv1-74-201ENSMUST00000103543 348 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Gm13039-201ENSMUST00000118638 794 ntBASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Gm12681-201ENSMUST00000132337 700 ntTSL 3 BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Gm15935-201ENSMUST00000141004 607 ntTSL 3 BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Tmod3-205ENSMUST00000215821 898 ntTSL 3 BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 AC152169.1-201ENSMUST00000223901 701 ntBASIC16.8■□□□□ 0.28
Scn4aQ9ER60 AC138604.1-201ENSMUST00000226969 739 ntBASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Fth1-201ENSMUST00000025563 866 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Gm6304-201ENSMUST00000096579 447 ntBASIC16.8■□□□□ 0.28
Scn4aQ9ER60 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Gm14247-201ENSMUST00000120950 237 ntBASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Gm22388-201ENSMUST00000158194 248 ntBASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Gm37452-201ENSMUST00000194416 1160 ntBASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Gm18711-201ENSMUST00000199341 750 ntBASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Apoa5-205ENSMUST00000215187 495 ntTSL 5 BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Grk3-204ENSMUST00000197888 1938 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 AC153524.2-201ENSMUST00000218351 1375 ntTSL 5 BASIC16.79■□□□□ 0.28
Scn4aQ9ER60 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn4aQ9ER60 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Scn4aQ9ER60 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Scn4aQ9ER60 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn4aQ9ER60 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Scn4aQ9ER60 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Scn4aQ9ER60 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn4aQ9ER60 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn4aQ9ER60 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Scn4aQ9ER60 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn4aQ9ER60 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Scn4aQ9ER60 Gm12684-201ENSMUST00000118675 999 ntBASIC16.78■□□□□ 0.28
Scn4aQ9ER60 Gm12986-201ENSMUST00000119037 967 ntBASIC16.78■□□□□ 0.28
Scn4aQ9ER60 Rrm2b-207ENSMUST00000146821 420 ntTSL 5 BASIC16.78■□□□□ 0.28
Scn4aQ9ER60 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC16.78■□□□□ 0.28
Scn4aQ9ER60 Gm7504-201ENSMUST00000201449 424 ntBASIC16.78■□□□□ 0.28
Scn4aQ9ER60 AC169511.1-201ENSMUST00000227639 995 ntBASIC16.78■□□□□ 0.28
Scn4aQ9ER60 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC16.78■□□□□ 0.28
Scn4aQ9ER60 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn4aQ9ER60 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 90.5 ms