Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Mir1247-201ENSMUST00000116706 82 ntBASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Gm24548-201ENSMUST00000158650 108 ntBASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Gm43179-201ENSMUST00000198797 275 ntBASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Gm5904-201ENSMUST00000210286 865 ntBASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Gm18935-201ENSMUST00000212692 664 ntBASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
Vps28Q9D1C8 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Vps28Q9D1C8 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Vps28Q9D1C8 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
Vps28Q9D1C8 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC13□□□□□ -0.33
Vps28Q9D1C8 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Gm14921-201ENSMUST00000118643 908 ntBASIC13□□□□□ -0.33
Vps28Q9D1C8 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC13□□□□□ -0.33
Vps28Q9D1C8 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC13□□□□□ -0.33
Vps28Q9D1C8 Gm27516-201ENSMUST00000184237 98 ntBASIC13□□□□□ -0.33
Vps28Q9D1C8 Olfr284-202ENSMUST00000206647 966 ntBASIC13□□□□□ -0.33
Vps28Q9D1C8 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC13□□□□□ -0.33
Vps28Q9D1C8 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 AC138604.1-201ENSMUST00000226969 739 ntBASIC13□□□□□ -0.33
Vps28Q9D1C8 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC13□□□□□ -0.33
Vps28Q9D1C8 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Vps28Q9D1C8 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC13□□□□□ -0.33
Vps28Q9D1C8 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC13□□□□□ -0.33
Vps28Q9D1C8 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Gm8228-201ENSMUST00000189949 2192 ntBASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Gm13492-201ENSMUST00000119772 665 ntBASIC12.99□□□□□ -0.33
Vps28Q9D1C8 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 66.1 ms