Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Mir680-2-201ENSMUST00000102163 110 ntBASIC13.34□□□□□ -0.27
Clp1Q99LI9 Gm23251-201ENSMUST00000103773 110 ntBASIC13.34□□□□□ -0.27
Clp1Q99LI9 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Gm11628-201ENSMUST00000117568 171 ntBASIC13.34□□□□□ -0.27
Clp1Q99LI9 Gm11667-201ENSMUST00000119828 486 ntBASIC13.34□□□□□ -0.27
Clp1Q99LI9 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC13.34□□□□□ -0.27
Clp1Q99LI9 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC13.34□□□□□ -0.27
Clp1Q99LI9 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Gm21811-201ENSMUST00000096485 930 ntBASIC13.34□□□□□ -0.27
Clp1Q99LI9 Gm10701-201ENSMUST00000098926 906 ntTSL 2 BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Clp1Q99LI9 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Clp1Q99LI9 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Gm22133-201ENSMUST00000102082 109 ntBASIC13.33□□□□□ -0.28
Clp1Q99LI9 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC13.33□□□□□ -0.28
Clp1Q99LI9 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Gm18304-201ENSMUST00000189162 546 ntBASIC13.33□□□□□ -0.28
Clp1Q99LI9 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Gm270-201ENSMUST00000223010 976 ntBASIC13.33□□□□□ -0.28
Clp1Q99LI9 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Clp1Q99LI9 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Gm29151-201ENSMUST00000196669 2513 ntTSL 5 BASIC13.33□□□□□ -0.28
Clp1Q99LI9 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Clp1Q99LI9 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC13.32□□□□□ -0.28
Clp1Q99LI9 H2-Q3-201ENSMUST00000172583 608 ntBASIC13.32□□□□□ -0.28
Clp1Q99LI9 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Gm43962-201ENSMUST00000203898 190 ntBASIC13.32□□□□□ -0.28
Clp1Q99LI9 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC13.32□□□□□ -0.28
Clp1Q99LI9 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms