Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Usp11Q99K46 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Usp11Q99K46 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Usp11Q99K46 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Usp11Q99K46 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Usp11Q99K46 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Usp11Q99K46 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Usp11Q99K46 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Usp11Q99K46 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Usp11Q99K46 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC13.37□□□□□ -0.27
Usp11Q99K46 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Usp11Q99K46 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC13.37□□□□□ -0.27
Usp11Q99K46 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Gm11618-201ENSMUST00000117946 267 ntBASIC13.37□□□□□ -0.27
Usp11Q99K46 Gm13829-201ENSMUST00000119600 138 ntBASIC13.37□□□□□ -0.27
Usp11Q99K46 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC13.37□□□□□ -0.27
Usp11Q99K46 Gm6266-201ENSMUST00000203844 806 ntBASIC13.37□□□□□ -0.27
Usp11Q99K46 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC13.37□□□□□ -0.27
Usp11Q99K46 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC13.37□□□□□ -0.27
Usp11Q99K46 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC13.37□□□□□ -0.27
Usp11Q99K46 AC155237.1-201ENSMUST00000226196 1279 ntBASIC13.37□□□□□ -0.27
Usp11Q99K46 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC13.37□□□□□ -0.27
Usp11Q99K46 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Usp11Q99K46 AC114008.2-201ENSMUST00000227699 1347 ntBASIC13.37□□□□□ -0.27
Usp11Q99K46 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
Usp11Q99K46 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Usp11Q99K46 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Zscan30-202ENSMUST00000224144 1458 ntBASIC13.36□□□□□ -0.27
Usp11Q99K46 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Usp11Q99K46 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC13.36□□□□□ -0.27
Usp11Q99K46 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Gm15824-201ENSMUST00000119516 955 ntBASIC13.36□□□□□ -0.27
Usp11Q99K46 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC13.36□□□□□ -0.27
Usp11Q99K46 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Usp11Q99K46 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC13.36□□□□□ -0.27
Usp11Q99K46 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC13.36□□□□□ -0.27
Usp11Q99K46 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC13.36□□□□□ -0.27
Usp11Q99K46 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC13.36□□□□□ -0.27
Usp11Q99K46 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC13.36□□□□□ -0.27
Usp11Q99K46 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC13.36□□□□□ -0.27
Usp11Q99K46 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC13.36□□□□□ -0.27
Usp11Q99K46 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Usp11Q99K46 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Usp11Q99K46 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
Usp11Q99K46 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC13.36□□□□□ -0.27
Usp11Q99K46 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Usp11Q99K46 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC13.36□□□□□ -0.27
Usp11Q99K46 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Usp11Q99K46 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Usp11Q99K46 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC13.35□□□□□ -0.27
Usp11Q99K46 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Usp11Q99K46 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Usp11Q99K46 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
Usp11Q99K46 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Usp11Q99K46 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Usp11Q99K46 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Usp11Q99K46 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Usp11Q99K46 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms