Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Gm11618-201ENSMUST00000117946 267 ntBASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Mir1894-201ENSMUST00000122802 81 ntBASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 H2-Pa-201ENSMUST00000182803 626 ntBASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Gm8598-201ENSMUST00000221184 836 ntBASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 AC110817.1-201ENSMUST00000225706 605 ntBASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Wdyhv1-206ENSMUST00000227142 786 ntBASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Gm5356-201ENSMUST00000093326 615 ntBASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ccdc40Q8BI79 Gm45532-201ENSMUST00000210342 3620 ntBASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Gm37513-201ENSMUST00000194830 2268 ntBASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Gm38378-201ENSMUST00000195153 2268 ntBASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Gm10156-201ENSMUST00000122364 462 ntBASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Gm9002-201ENSMUST00000178437 499 ntBASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Ighv8-10-201ENSMUST00000199579 358 ntBASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Gm9794-201ENSMUST00000202370 423 ntBASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Lvrn-201ENSMUST00000025358 3219 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc40Q8BI79 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc40Q8BI79 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC13.27□□□□□ -0.28
Ccdc40Q8BI79 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
Ccdc40Q8BI79 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc40Q8BI79 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc40Q8BI79 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc40Q8BI79 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc40Q8BI79 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC13.27□□□□□ -0.28
Ccdc40Q8BI79 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc40Q8BI79 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Mir686-201ENSMUST00000102174 109 ntBASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Mup-ps23-201ENSMUST00000118063 630 ntBASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Gm15806-201ENSMUST00000120696 955 ntBASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Proscos-202ENSMUST00000178990 666 ntBASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Gm28693-202ENSMUST00000190758 331 ntBASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Gm9124-201ENSMUST00000191789 1092 ntBASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Gm9113-201ENSMUST00000192510 1018 ntBASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Gm9131-201ENSMUST00000193557 1089 ntBASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Gm9121-201ENSMUST00000193749 1071 ntBASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 AC132467.2-202ENSMUST00000227726 559 ntBASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc40Q8BI79 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 53.7 ms